FiT-DB / Search/ Help/ Sample detail

Os03g0215000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.97 (0.024) R2 : 0.18
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.542 (0.0611) R2dC : 0.141 R2C : 0.125
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.248 (0.0506) R2dN8 : 0.0556 R2N8 : 0.0388
σ : 0.453
deviance : 93.94
__
_____
C
peak time of C : 15.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
82.18 0.426 9.95 -0.4 0.859 0.673 1.04 0.522 0.314 16.3 89 272 -- --
82.55 0.423 9.96 -0.373 0.844 0.678 0.792 -- 0.318 16.3 89.32 261 -- --
84.27 0.428 9.96 -0.339 0.854 0.646 -- -0.0833 0.327 16.2 88.57 271 -- --
84.23 0.427 9.96 -0.363 0.825 0.627 -- -- 0.313 16.3 89.14 261 -- --
102.22 0.471 9.95 -0.464 -- 0.445 -- 0.948 0.259 -- 85.72 1113 -- --
91.16 0.448 9.97 -0.294 0.534 -- 0.444 -- 0.213 15.8 -- -- -- --
91.75 0.449 9.97 -0.288 0.536 -- -- -- 0.216 15.8 -- -- -- --
103.68 0.474 9.96 -0.356 -- 0.464 -- -- 0.267 -- 83.48 1113 -- --
87.58 0.436 9.95 -- 0.805 0.568 -- -- 0.345 16.2 89.32 259 -- --
107.58 0.485 9.97 -0.31 -- -- -- -- 0.201 -- -- -- -- --
93.94 0.453 9.97 -- 0.542 -- -- -- 0.248 15.8 -- -- -- --
106.82 0.483 9.97 -- -- -0.233 -- -- 0.202 -- 79 1125 -- --
110.12 0.49 9.96 -- -- -- -- -- 0.236 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.00 humidity 60.0 270 > th dose dependent rect. 21 10
2 78.21 atmosphere 1000.0 30 > th dose independent rect. 5 13
8 78.54 humidity 90.0 270 < th dose independent rect. 23 13
18 79.20 wind 1.0 90 > th dose independent rect. 18 11
19 79.23 wind 1.0 30 > th dose independent rect. 9 20
30 79.65 humidity 90.0 270 < th dose independent rect. 17 19
35 79.90 humidity 90.0 270 < th dose independent sin 7 NA
40 79.97 wind 1.0 90 > th dose independent rect. 7 22
46 80.10 temperature 30.0 30 < th dose independent rect. 18 11
57 80.23 humidity 90.0 270 > th dose independent sin 7 NA
59 80.29 humidity 90.0 270 > th dose independent rect. 22 9
65 80.36 atmosphere 1000.0 30 > th dose independent rect. 12 21
73 80.47 temperature 20.0 30 > th dose independent rect. 5 4
77 80.49 wind 1.0 90 > th dose independent rect. 18 20
80 80.54 temperature 15.0 10 > th dose dependent rect. 9 5
82 80.55 temperature 10.0 10 > th dose dependent rect. 9 20
87 80.61 radiation 1.0 30 < th dose dependent sin 12 NA
89 80.63 humidity 80.0 270 > th dose dependent sin 8 NA
90 80.65 temperature 15.0 270 > th dose dependent rect. 7 5
100 80.75 humidity 90.0 270 > th dose independent rect. 22 20
106 80.81 humidity 90.0 270 > th dose independent rect. 22 17
117 80.88 wind 5.0 90 < th dose independent rect. 9 19
123 80.89 radiation 1.0 30 > th dose independent rect. 14 19
142 81.06 radiation 1.0 30 > th dose independent rect. 12 21
143 81.06 temperature 15.0 270 > th dose dependent rect. 9 1
152 81.10 temperature 20.0 10 > th dose dependent rect. 9 3
154 81.12 humidity 60.0 30 > th dose independent rect. 18 11
158 81.13 radiation 1.0 30 < th dose dependent rect. 18 11
160 81.15 temperature 15.0 10 > th dose dependent rect. 5 4
173 81.22 radiation 1.0 90 > th dose independent rect. 14 17
192 81.30 radiation 1.0 30 < th dose dependent rect. 18 14
215 81.36 humidity 80.0 270 > th dose dependent rect. 3 3
218 81.38 humidity 90.0 270 > th dose independent rect. 1 6
238 81.44 temperature 20.0 30 > th dose independent rect. 5 13
240 81.45 radiation 1.0 30 > th dose independent sin 12 NA
250 81.49 atmosphere 1015.0 10 < th dose dependent rect. 9 5
251 81.49 atmosphere 995.0 10 > th dose dependent rect. 5 13
272 81.58 wind 7.0 270 < th dose independent rect. 17 10
283 81.62 radiation 1.0 30 < th dose independent rect. 18 11
288 81.63 atmosphere 1000.0 10 > th dose independent rect. 14 19
298 81.65 humidity 90.0 270 > th dose independent rect. 3 3
300 81.65 radiation 10.0 30 > th dose independent rect. 9 5
307 81.66 humidity 80.0 270 > th dose dependent rect. 1 6
320 81.68 humidity 90.0 270 > th dose dependent rect. 12 19
331 81.71 humidity 90.0 270 > th dose independent rect. 1 14
352 81.75 wind 1.0 10 > th dose independent rect. 9 5
365 81.77 humidity 90.0 270 > th dose dependent rect. 9 22
368 81.78 atmosphere 1015.0 270 < th dose dependent rect. 7 4
382 81.80 temperature 10.0 10 > th dose dependent rect. 9 16
383 81.81 radiation 1.0 90 < th dose independent sin 13 NA
387 81.82 atmosphere 1015.0 270 < th dose dependent rect. 9 1
394 81.83 humidity 90.0 270 > th dose dependent rect. 21 19
395 81.83 humidity 90.0 270 > th dose dependent rect. 21 21
423 81.90 humidity 50.0 10 > th dose dependent rect. 5 13
440 81.94 wind 7.0 30 < th dose independent rect. 18 11
446 81.95 humidity 90.0 270 > th dose independent rect. 4 1
492 82.02 radiation 40.0 10 < th dose independent rect. 13 20
503 82.04 humidity 90.0 270 < th dose independent rect. 7 4
523 82.07 radiation 40.0 90 < th dose independent rect. 12 21
529 82.10 precipitation 0.1 270 < th dose independent rect. 17 10
530 82.10 radiation 20.0 10 < th dose independent rect. 5 13
535 82.10 precipitation 0.1 270 < th dose dependent rect. 17 10
539 82.11 radiation 40.0 10 < th dose dependent rect. 5 13
550 82.14 temperature 20.0 270 > th dose independent rect. 12 19
560 82.17 wind 7.0 270 < th dose independent rect. 7 4
591 82.20 radiation 30.0 4320 < th dose dependent rect. 19 10
613 82.23 temperature 25.0 270 > th dose independent rect. 17 19
621 82.24 precipitation 0.1 270 < th dose independent rect. 7 4
625 82.24 precipitation 0.1 270 < th dose dependent rect. 7 4
635 82.25 wind 9.0 43200 > th dose dependent rect. 15 1
636 82.25 humidity 50.0 10 > th dose dependent rect. 5 4
648 82.27 temperature 10.0 270 > th dose independent rect. 7 4
649 82.27 atmosphere 995.0 270 > th dose independent rect. 7 4
650 82.27 atmosphere 1015.0 270 < th dose independent rect. 7 4
652 82.27 temperature 30.0 30 < th dose independent rect. 5 13
654 82.27 temperature 10.0 270 > th dose independent rect. 11 20
681 82.31 wind 3.0 10 < th dose independent rect. 5 4
697 82.32 humidity 90.0 270 > th dose dependent rect. 1 23
704 82.34 humidity 50.0 270 > th dose independent rect. 7 4
708 82.34 wind 9.0 10 < th dose dependent rect. 5 4
727 82.37 humidity 90.0 10 < th dose independent rect. 9 21
733 82.38 temperature 20.0 270 > th dose independent rect. 2 5
751 82.40 radiation 1.0 270 > th dose independent rect. 7 4
755 82.40 wind 3.0 90 < th dose dependent rect. 5 2
767 82.41 humidity 90.0 270 > th dose dependent no NA NA
794 82.45 wind 1.0 270 > th dose independent rect. 7 4
813 82.47 temperature 15.0 10 > th dose independent rect. 14 19
816 82.48 temperature 10.0 10 > th dose independent rect. 9 5
818 82.48 atmosphere 995.0 10 > th dose independent rect. 9 5
819 82.48 atmosphere 1015.0 10 < th dose independent rect. 9 5
820 82.48 precipitation 0.1 10 < th dose independent rect. 9 5
822 82.48 precipitation 0.1 10 < th dose independent rect. 9 20
825 82.48 precipitation 0.1 10 < th dose dependent rect. 9 5
826 82.48 precipitation 0.1 10 < th dose dependent rect. 9 20
840 82.51 wind 7.0 270 < th dose independent rect. 9 1
841 82.51 radiation 30.0 10 < th dose independent rect. 5 4
850 82.52 humidity 70.0 10 > th dose independent rect. 5 4
867 82.53 humidity 90.0 270 > th dose independent rect. 12 19
886 82.55 wind 9.0 270 < th dose dependent rect. 7 5
897 82.57 humidity 90.0 270 < th dose independent rect. 9 1
898 82.57 temperature 10.0 1440 > th dose independent rect. 10 5
904 82.57 temperature 10.0 1440 > th dose independent rect. 15 19
920 82.59 wind 7.0 10 < th dose independent rect. 5 4
922 82.59 temperature 10.0 10 > th dose independent rect. 5 4
924 82.59 temperature 30.0 10 < th dose independent rect. 5 4
925 82.59 humidity 50.0 10 > th dose independent rect. 5 4
927 82.59 atmosphere 995.0 10 > th dose independent rect. 5 4
928 82.59 atmosphere 1015.0 10 < th dose independent rect. 5 4
929 82.59 wind 9.0 10 < th dose independent rect. 9 5
931 82.59 temperature 10.0 10 > th dose independent rect. 9 20
951 82.61 radiation 1.0 10 > th dose independent rect. 18 15
957 82.62 precipitation 0.1 10 < th dose independent rect. 5 4
962 82.62 precipitation 0.1 10 < th dose dependent rect. 5 4
968 82.63 humidity 90.0 10 < th dose independent rect. 9 5
969 82.63 wind 7.0 4320 > th dose independent rect. 15 9
971 82.63 humidity 90.0 270 > th dose independent rect. 9 22
979 82.65 temperature 25.0 30 > th dose independent rect. 9 3
982 82.65 wind 9.0 270 < th dose independent rect. 7 14
991 82.66 precipitation 0.1 270 < th dose independent rect. 7 14
996 82.66 precipitation 0.1 270 < th dose dependent rect. 7 14