BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0215000 Os03g0215000|AK067049
(369 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0215000 Conserved hypothetical protein 640 0.0
Os02g0154600 Conserved hypothetical protein 608 e-174
Os08g0203900 UAA transporter family protein 305 3e-83
Os09g0314333 UAA transporter family protein 296 2e-80
Os08g0365600 72 8e-13
>Os03g0215000 Conserved hypothetical protein
Length = 369
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/369 (88%), Positives = 325/369 (88%)
Query: 1 MSNLSEPSKEXXXXXXXXXVQKTGAWSNTLNILLQQASVYGVAAGYCLSASLLSIINKWA 60
MSNLSEPSKE VQKTGAWSNTLNILLQQASVYGVAAGYCLSASLLSIINKWA
Sbjct: 1 MSNLSEPSKEAASADDSSAVQKTGAWSNTLNILLQQASVYGVAAGYCLSASLLSIINKWA 60
Query: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE
Sbjct: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
Query: 121 LLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
LLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT
Sbjct: 121 LLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
Query: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLMGELNQM 240
VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLMGELNQM
Sbjct: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLMGELNQM 240
Query: 241 KGDSAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISATGFTVLGIVNKLLTVVIN 300
KGDSAKVTNWLSSDVILPVA RRAISATGFTVLGIVNKLLTVVIN
Sbjct: 241 KGDSAKVTNWLSSDVILPVALSCLFGLSISFFGFSCRRAISATGFTVLGIVNKLLTVVIN 300
Query: 301 LLIWDKHASFVGTIGLLICMSGGVLYQQSTTXXXXXXXXXXXXXXXXXXXLLEMQQGLES 360
LLIWDKHASFVGTIGLLICMSGGVLYQQSTT LLEMQQGLES
Sbjct: 301 LLIWDKHASFVGTIGLLICMSGGVLYQQSTTKPKAPKAEPKEENDEEQQKLLEMQQGLES 360
Query: 361 SSTQKQASS 369
SSTQKQASS
Sbjct: 361 SSTQKQASS 369
>Os02g0154600 Conserved hypothetical protein
Length = 369
Score = 608 bits (1569), Expect = e-174, Method: Compositional matrix adjust.
Identities = 308/359 (85%), Positives = 309/359 (86%)
Query: 1 MSNLSEPSKEXXXXXXXXXVQKTGAWSNTLNILLQQASVYGVAAGYCLSASLLSIINKWA 60
MSNLSEPSKE VQKTGAWSNTLNILLQQ SVYGVAAGYCLSASLLSIINKWA
Sbjct: 1 MSNLSEPSKEAVSADDSSAVQKTGAWSNTLNILLQQTSVYGVAAGYCLSASLLSIINKWA 60
Query: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE
Sbjct: 61 VMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTNSE 120
Query: 121 LLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
LLLHANVDTFIVFRSAVPIFVAIGET YLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT
Sbjct: 121 LLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSLKTWLSLSTILGGSVIYVFTDNQFT 180
Query: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEALMLFPLEMLLMGELNQM 240
VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEA MLFPLEMLL GELNQM
Sbjct: 181 VTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAFMLFPLEMLLTGELNQM 240
Query: 241 KGDSAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISATGFTVLGIVNKLLTVVIN 300
KGD+AKVTNWLSSDVILPVA RRAISATGFTVLGIVNKLLTVVIN
Sbjct: 241 KGDNAKVTNWLSSDVILPVALSCLFGLSISFFGFSCRRAISATGFTVLGIVNKLLTVVIN 300
Query: 301 LLIWDKHASFVGTIGLLICMSGGVLYQQSTTXXXXXXXXXXXXXXXXXXXLLEMQQGLE 359
LLIWDKHASFVGTIGLLICMSG VLYQQSTT LLEMQQG E
Sbjct: 301 LLIWDKHASFVGTIGLLICMSGSVLYQQSTTKPKAPKAEPKEENDEEQQKLLEMQQGHE 359
>Os08g0203900 UAA transporter family protein
Length = 342
Score = 305 bits (781), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 156/288 (54%), Positives = 202/288 (70%), Gaps = 1/288 (0%)
Query: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKF 104
GY L +SLL+IINK+A+ KF YPG LTALQY TSV GV G+L L+ HD NL+T KF
Sbjct: 14 GYALCSSLLAIINKYAITKFSYPGLLTALQYLTSVAGVWTLGKLGLLYHDPFNLQTAKKF 73
Query: 105 LPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLST 164
PAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T + QP PS T++SL T
Sbjct: 74 APAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQPCPSKLTFVSLVT 133
Query: 165 ILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAL 224
ILGG+V YV TD+ F++TAY+WAVAYL +++ + VYIKH+V +GLNTWG VLYNNL +L
Sbjct: 134 ILGGAVGYVMTDSGFSLTAYSWAVAYLVTITTEMVYIKHMVTKLGLNTWGFVLYNNLLSL 193
Query: 225 MLFPLEMLLMGE-LNQMKGDSAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISAT 283
++ P+ L GE L+ + ++ +W D + V+ R+AISAT
Sbjct: 194 IIAPVFWFLTGEHLSVFRAIESRGQSWFELDAFVAVSLSCVFGLLISFFGFAARKAISAT 253
Query: 284 GFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGGVLYQQSTT 331
FTV G+VNK LTV IN++IWDKHAS G + LL ++GGVLYQQS T
Sbjct: 254 AFTVTGVVNKFLTVAINVMIWDKHASSFGLVCLLFTLAGGVLYQQSVT 301
>Os09g0314333 UAA transporter family protein
Length = 343
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/288 (53%), Positives = 192/288 (66%), Gaps = 1/288 (0%)
Query: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKF 104
GY L +SLL+IINK+AV KF YP LTALQY TS GV + G+L + HD NL KF
Sbjct: 14 GYALCSSLLAIINKYAVTKFGYPALLTALQYLTSAGGVWILGKLGFLCHDPFNLENAKKF 73
Query: 105 LPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSLST 164
PAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T + QP PS T+LSL
Sbjct: 74 APAAIVFYLAIFTNTNLLYHANVDTFIVFRSLTPLLVAIADTAFRKQPCPSKLTFLSLVV 133
Query: 165 ILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWGLVLYNNLEAL 224
ILGG+V YV TD+ F++TAY+WA+AYL ++ + VYIKH+V +GLNTWG VLYNNL +L
Sbjct: 134 ILGGAVGYVITDSAFSLTAYSWALAYLVIITTEMVYIKHIVTNLGLNTWGFVLYNNLLSL 193
Query: 225 MLFPLEMLLMGELNQM-KGDSAKVTNWLSSDVILPVAXXXXXXXXXXXXXXXXRRAISAT 283
M+ P L GE + ++ W D + VA R+AISAT
Sbjct: 194 MMAPFFWFLTGEYKSLFTAIESRGERWFQVDAFVAVALSCVFGLLISFFGFATRKAISAT 253
Query: 284 GFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGGVLYQQSTT 331
FTV G+VNK LTV IN+LIWDKH+S G I LL ++GGVLYQQS T
Sbjct: 254 AFTVTGVVNKFLTVAINVLIWDKHSSPFGLICLLFTIAGGVLYQQSVT 301
>Os08g0365600
Length = 401
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 44/61 (72%)
Query: 59 WAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHDGLNLRTMWKFLPAAVMFYISIFTN 118
+A+ KF YPG LTALQY TSV GV +L L+ HD N +T KF PAA++FY++IFTN
Sbjct: 18 YAMTKFSYPGLLTALQYLTSVAGVWTLAKLGLLYHDPFNFQTAKKFAPAALVFYLAIFTN 77
Query: 119 S 119
+
Sbjct: 78 T 78
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,571,528
Number of extensions: 323185
Number of successful extensions: 835
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 830
Number of HSP's successfully gapped: 5
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)