Os08g0203900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UAA transporter family protein.
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Os08g0203900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UAA transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.92 | 0.634 | 5.96 | -0.711 | 0.329 | -1.37 | 0.469 | -0.708 | -0.433 | 9.98 | 22.95 | 890 | -- | -- |
| 182.42 | 0.629 | 5.97 | -0.794 | 0.325 | -1.26 | 0.288 | -- | -0.446 | 9.68 | 22.85 | 901 | -- | -- |
| 182.43 | 0.629 | 5.96 | -0.736 | 0.332 | -1.34 | -- | -0.429 | -0.432 | 9.32 | 22.77 | 887 | -- | -- |
| 182.62 | 0.629 | 5.97 | -0.787 | 0.329 | -1.27 | -- | -- | -0.443 | 9.19 | 22.78 | 888 | -- | -- |
| 188.02 | 0.639 | 5.98 | -0.737 | -- | -1.22 | -- | -0.278 | -0.428 | -- | 22.85 | 1067 | -- | -- |
| 200.88 | 0.664 | 5.94 | -0.455 | 0.149 | -- | -0.989 | -- | -0.256 | 4.79 | -- | -- | -- | -- |
| 201.61 | 0.665 | 5.93 | -0.448 | 0.23 | -- | -- | -- | -0.25 | 8 | -- | -- | -- | -- |
| 188.11 | 0.639 | 5.98 | -0.77 | -- | -1.17 | -- | -- | -0.433 | -- | 22.86 | 1065 | -- | -- |
| 196.58 | 0.653 | 5.95 | -- | 0.298 | -0.854 | -- | -- | -0.313 | 9.03 | 23 | 862 | -- | -- |
| 204.51 | 0.668 | 5.94 | -0.446 | -- | -- | -- | -- | -0.247 | -- | -- | -- | -- | -- |
| 206.9 | 0.673 | 5.92 | -- | 0.228 | -- | -- | -- | -0.2 | 8.14 | -- | -- | -- | -- |
| 201.38 | 0.661 | 5.95 | -- | -- | -0.754 | -- | -- | -0.299 | -- | 23 | 1004 | -- | -- |
| 209.76 | 0.676 | 5.93 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 173.38 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 173.87 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 5 | 174.19 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 11 |
| 14 | 174.72 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 15 | 174.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 21 | 175.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 22 | 175.07 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 55 | 175.98 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 74 | 176.35 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 75 | 176.36 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 91 | 176.49 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 98 | 176.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 147 | 177.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 152 | 177.21 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 163 | 177.30 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 8 |
| 165 | 177.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 167 | 177.34 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 170 | 177.35 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 174 | 177.39 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 184 | 177.46 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 19 |
| 195 | 177.60 | wind | 3 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 261 | 178.18 | wind | 5 | 4320 | > th | dose dependent | rect. | 19 | 7 |
| 268 | 178.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 2 |
| 289 | 178.49 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 5 |
| 298 | 178.55 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 3 |
| 309 | 178.64 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 321 | 178.76 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 8 |
| 323 | 178.79 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 341 | 178.89 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 10 |
| 350 | 178.94 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 5 |
| 396 | 179.18 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 401 | 179.20 | wind | 1 | 10 | > th | dose independent | rect. | 12 | 23 |
| 452 | 179.46 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 14 |
| 481 | 179.61 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 19 |
| 490 | 179.66 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 511 | 179.75 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 19 |
| 513 | 179.76 | wind | 3 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 523 | 179.81 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 553 | 179.96 | temperature | 20 | 720 | < th | dose independent | sin | 5 | NA |
| 571 | 180.04 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 574 | 180.07 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 9 |
| 599 | 180.16 | wind | 5 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 676 | 180.42 | wind | 1 | 4320 | < th | dose dependent | rect. | 4 | 2 |
| 703 | 180.52 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 724 | 180.57 | wind | 1 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 742 | 180.60 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 745 | 180.60 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 747 | 180.61 | atmosphere | 1000 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 761 | 180.67 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 16 | 11 |
| 787 | 180.73 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 841 | 180.93 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 850 | 180.95 | wind | 1 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 851 | 180.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 911 | 181.09 | atmosphere | 1000 | 270 | < th | dose independent | rect. | 22 | 19 |
| 926 | 181.12 | radiation | 10 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 935 | 181.15 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 965 | 181.24 | wind | 1 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 982 | 181.29 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 17 |