BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0215000 Os03g0215000|AK067049
(369 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G76340.1 | chr1:28635188-28636306 REVERSE LENGTH=373 459 e-129
AT5G19980.1 | chr5:6749907-6750932 REVERSE LENGTH=342 280 7e-76
AT2G13650.1 | chr2:5687584-5690303 REVERSE LENGTH=334 55 8e-08
AT1G07290.1 | chr1:2242284-2244428 REVERSE LENGTH=376 48 9e-06
>AT1G76340.1 | chr1:28635188-28636306 REVERSE LENGTH=373
Length = 372
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 235/333 (70%), Positives = 272/333 (81%), Gaps = 1/333 (0%)
Query: 31 NILLQQASVYGVAAGYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKL 90
++ L+QASVYGVAAGYCLSASLLSIINKWA+MKFPYPGALTA+QYFTS GVLLC Q+KL
Sbjct: 27 SVFLRQASVYGVAAGYCLSASLLSIINKWAIMKFPYPGALTAMQYFTSAAGVLLCAQMKL 86
Query: 91 IEHDGLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLH 150
IEHD LNL TMW+FLPAA++FY+S+FTNSELLLHANVDTFIVFRSAVPIFVAIGETL+LH
Sbjct: 87 IEHDSLNLLTMWRFLPAAMIFYLSLFTNSELLLHANVDTFIVFRSAVPIFVAIGETLFLH 146
Query: 151 QPWPSLKTWLSLSTILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGL 210
QPWPS+KTW SL+TI GGS++YVFTD QFT+ AY+WA+AYL SM+IDFVYIKHVVMTIGL
Sbjct: 147 QPWPSVKTWGSLATIFGGSLLYVFTDYQFTIAAYSWALAYLVSMTIDFVYIKHVVMTIGL 206
Query: 211 NTWGLVLYNNLEALMLFPLEMLLMGELNQMKGDSAKVTNWLSSDVILPVAXXXXXXXXXX 270
NTWGLVLYNNLEAL+LFPLE+L+MGEL ++K + T+W S V+LPV
Sbjct: 207 NTWGLVLYNNLEALLLFPLELLIMGELKKIKHEITDETDWYSLQVVLPVGLSCLFGLAIS 266
Query: 271 XXXXXXRRAISATGFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGGVLYQQST 330
RRAISATGFTVLGIVNKLLTVVINL++WDKH++FVGT+GLL+CM GGV+YQQST
Sbjct: 267 FFGFSCRRAISATGFTVLGIVNKLLTVVINLMVWDKHSTFVGTLGLLVCMFGGVMYQQST 326
Query: 331 -TXXXXXXXXXXXXXXXXXXXLLEMQQGLESSS 362
LLEMQ+ ES+S
Sbjct: 327 IKKPNATQEAKPQEQDEEQEKLLEMQENKESNS 359
>AT5G19980.1 | chr5:6749907-6750932 REVERSE LENGTH=342
Length = 341
Score = 280 bits (717), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 153/296 (51%), Positives = 191/296 (64%), Gaps = 1/296 (0%)
Query: 35 QQASVYGVAAGYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKLIEHD 94
+Q + + GY L +SLL++INK A+ F YPG LTALQY T V V L G+ LI HD
Sbjct: 10 KQLTTSSLVIGYALCSSLLAVINKLAITYFNYPGLLTALQYLTCTVAVYLLGKSGLINHD 69
Query: 95 GLNLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWP 154
T KFLPAA++FY++IFTN+ LL HANVDTFIVFRS P+ VAI +T++ QP P
Sbjct: 70 PFTWDTAKKFLPAAIVFYLAIFTNTNLLRHANVDTFIVFRSLTPLLVAIADTVFRSQPLP 129
Query: 155 SLKTWLSLSTILGGSVIYVFTDNQFTVTAYTWAVAYLASMSIDFVYIKHVVMTIGLNTWG 214
S T+LSL IL G+V YV TD+ FT+TAY+WA+AYL +++ + VYIKH+V I LN WG
Sbjct: 130 SRLTFLSLVVILAGAVGYVATDSSFTLTAYSWALAYLVTITTEMVYIKHMVSNIKLNIWG 189
Query: 215 LVLYNNLEALMLFPLEMLLMGELNQM-KGDSAKVTNWLSSDVILPVAXXXXXXXXXXXXX 273
LVLYNNL +LM+ P+ L GE ++ S N VA
Sbjct: 190 LVLYNNLLSLMIAPVFWFLTGEFTEVFAALSENRGNLFEPYAFSSVAASCVFGFLISYFG 249
Query: 274 XXXRRAISATGFTVLGIVNKLLTVVINLLIWDKHASFVGTIGLLICMSGGVLYQQS 329
R AISAT FTV G+VNK LTVVIN+LIWDKHA+ VG + LL + GGV YQQS
Sbjct: 250 FAARNAISATAFTVTGVVNKFLTVVINVLIWDKHATPVGLVCLLFTICGGVGYQQS 305
>AT2G13650.1 | chr2:5687584-5690303 REVERSE LENGTH=334
Length = 333
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 10/185 (5%)
Query: 45 GYCLSASLLSIINKWAVMKFPYPGALTALQY--FTSVVGVLLCGQLKLIEHDGLNLRTMW 102
YC+S+ + ++NK+ + + + + + Y F SV+ V+ + LI + L LR M
Sbjct: 39 AYCISSCSMILVNKFVLSSYNFNAGIFLMLYQNFVSVIIVVGLSLMGLITTEPLTLRLMK 98
Query: 103 KFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTWLSL 162
+ P V+F + T+ L + NV V ++ + A+GE +YL + W +L
Sbjct: 99 VWFPVNVIFVGMLITSMFSLKYINVAMVTVLKNVTNVITAVGE-MYLFNKQHDNRVWAAL 157
Query: 163 STILGGSVIYVFTDNQFTVTAYTWAVA-------YLASMSIDFVYIKHVVMTIGLNTWGL 215
++ +V TD F Y W +A Y ++ K V + LN + +
Sbjct: 158 FLMIISAVSGGITDLSFNAVGYAWQIANCFLTASYSLTLRKTMDTAKQVTQSGNLNEFSM 217
Query: 216 VLYNN 220
VL NN
Sbjct: 218 VLLNN 222
>AT1G07290.1 | chr1:2242284-2244428 REVERSE LENGTH=376
Length = 375
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 43 AAGYCLSASLLSIINKWAVMKFPYPGALTALQYFTSVVGVLLCGQLKL---IEHDGLNLR 99
A YC+S+ + I+NK + + + ++ L + +++ L+ L + + + N +
Sbjct: 82 GAAYCISSCSMIILNKIVLSSYNFNAGVS-LMLYQNLISCLVVAVLDISGVVSVEKFNWK 140
Query: 100 TMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSLKTW 159
+ ++P V+F + + L + NV + ++A I IGE +Y+ + + K W
Sbjct: 141 LIRVWMPVNVIFVGMLVSGMYSLKYINVAMVTILKNATNILTGIGE-VYMFRKRQNNKVW 199
Query: 160 LSLSTILGGSVIYVFTDNQFTVTAYTWAVAYL---ASMSIDFVYI----KHVVMTIGLNT 212
++ ++ ++ TD F YTW +A AS S+ + K + LN
Sbjct: 200 AAMFMMIISAISGGITDLTFDAVGYTWQLANCFLTASYSLTLRRVMDKAKQSTKSGSLNE 259
Query: 213 WGLVLYNNLEALMLFPLEMLLMGE 236
+VL NNL ++ + ++L+GE
Sbjct: 260 VSMVLLNNLLSIPFGIILIILLGE 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,274,599
Number of extensions: 219490
Number of successful extensions: 457
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 455
Number of HSP's successfully gapped: 6
Length of query: 369
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 269
Effective length of database: 8,364,969
Effective search space: 2250176661
Effective search space used: 2250176661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)