BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0199300 Os08g0199300|AK062256
(394 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0199300 Similar to YyaF/YCHF TRANSFAC/OBG family small... 786 0.0
Os03g0781000 Similar to GTP-dependent nucleic acid-binding ... 87 2e-17
Os03g0799700 GTP1/OBG subdomain containing protein 66 5e-11
Os07g0669200 GTP1/OBG subdomain containing protein 66 5e-11
>Os08g0199300 Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA
binding domain TGS (Fragment)
Length = 394
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/381 (100%), Positives = 381/381 (100%)
Query: 14 ERPILGRFSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERF 73
ERPILGRFSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERF
Sbjct: 14 ERPILGRFSSHLKIGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERF 73
Query: 74 DWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKE 133
DWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKE
Sbjct: 74 DWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKE 133
Query: 134 VTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKA 193
VTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKA
Sbjct: 134 VTHIDDSVDPVRDLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCEKVKA 193
Query: 194 HLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQE 253
HLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQE
Sbjct: 194 HLEDGKDVRFGDWKSADIEILNTFQLLTAKPVVYLVNMSEKDYQRKKNKFLPKIHAWVQE 253
Query: 254 HGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPD 313
HGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPD
Sbjct: 254 HGGETIIPFSCAFERLLADMPPDEAAKYCAENQIASVIPKIIKTGFAAIHLIYFFTAGPD 313
Query: 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKAAGKYRQEGKT 373
EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKAAGKYRQEGKT
Sbjct: 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVMKFDDLKELGSESAVKAAGKYRQEGKT 373
Query: 374 YVVQDGDIIFFKFNVSGGGKK 394
YVVQDGDIIFFKFNVSGGGKK
Sbjct: 374 YVVQDGDIIFFKFNVSGGGKK 394
>Os03g0781000 Similar to GTP-dependent nucleic acid-binding protein engD
Length = 98
Score = 87.0 bits (214), Expect = 2e-17, Method: Composition-based stats.
Identities = 44/79 (55%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Query: 51 AENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGN 110
A NFPFCTI+PN V +PD R L +L K K + +E+ DIAGLV+GA GEGLGN
Sbjct: 17 AANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGN 76
Query: 111 AFLSHIRAVDGIFHVLRAF 129
FLS+IR VD I L+AF
Sbjct: 77 QFLSNIREVDSI---LQAF 92
>Os03g0799700 GTP1/OBG subdomain containing protein
Length = 504
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 83/171 (48%), Gaps = 27/171 (15%)
Query: 27 IGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEV 86
+G+VGLPN GKST + +T ++PF T+ PN R+ D L +
Sbjct: 279 VGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGG-DPALGAL--------QF 329
Query: 87 SAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVRD 146
S+ + D+ GL+ GAH G+GLG FL H+R I HV+ A D V D
Sbjct: 330 SSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRVIVHVVDAAADDPVD----------D 379
Query: 147 LETIGEELRLKDIEFVQ-------NKIDDLEKSMKRSNDKQLKLEHELCEK 190
+ + EELR+ + ++++ NKI DL K+ R + ++ CE+
Sbjct: 380 YKIVREELRMYNPQYLERPYVVVLNKI-DLPKAQDRLSSLAFEISSIGCEE 429
>Os07g0669200 GTP1/OBG subdomain containing protein
Length = 752
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 27 IGIVGLPNVGKSTFFNIVTKLSIPAENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEV 86
+GIVG PN GKST ++ N+PF T+ PN V + +
Sbjct: 455 VGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPNLGVVSL----------------DF 498
Query: 87 SAYLEINDIAGLVRGAHAGEGLGNAFLSHIRAVDGIFHVLRAFEDKEVTHIDDSVDPVR- 145
A + + D+ GL+ GAH G GLG+ FL H + HV+ D + + VR
Sbjct: 499 DATMVVADLPGLLEGAHRGYGLGHEFLRHSERCSVLVHVV----DGSGEQPEYEFEAVRL 554
Query: 146 DLETIGEELRLKDIEFVQNKIDDLEKSMKRSNDKQLKLEHELCE 189
+LE L K V NK+ DL ++ +R N Q KL+ E E
Sbjct: 555 ELELFSPSLVDKPYIVVYNKM-DLPEASERWNKFQEKLQAEGIE 597
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.139 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,553,587
Number of extensions: 581581
Number of successful extensions: 1491
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1492
Number of HSP's successfully gapped: 4
Length of query: 394
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 291
Effective length of database: 11,657,759
Effective search space: 3392407869
Effective search space used: 3392407869
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)