Os03g0799700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP1/OBG subdomain containing protein.
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Os03g0799700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP1/OBG subdomain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54.47 | 0.347 | 13 | 0.0599 | 1.44 | -0.463 | -0.267 | 0.156 | -0.495 | 18.1 | 20.05 | 20 | -- | -- |
| 54.6 | 0.344 | 13 | 0.0367 | 1.45 | -0.476 | -0.219 | -- | -0.499 | 18.1 | 20.08 | 20 | -- | -- |
| 54.64 | 0.344 | 13 | 0.0596 | 1.44 | -0.472 | -- | 0.127 | -0.495 | 18.1 | 20.06 | 20 | -- | -- |
| 54.73 | 0.345 | 13 | 0.0379 | 1.44 | -0.48 | -- | -- | -0.5 | 18.1 | 20.06 | 20 | -- | -- |
| 161.11 | 0.591 | 13 | 0.0377 | -- | -0.344 | -- | 0.405 | -0.536 | -- | 20.1 | 13 | -- | -- |
| 63.33 | 0.373 | 13 | -0.0941 | 1.42 | -- | -0.426 | -- | -0.586 | 18.4 | -- | -- | -- | -- |
| 63.78 | 0.374 | 13 | -0.0883 | 1.41 | -- | -- | -- | -0.587 | 18.4 | -- | -- | -- | -- |
| 161.96 | 0.593 | 13 | -0.0329 | -- | -0.365 | -- | -- | -0.552 | -- | 20.02 | 13 | -- | -- |
| 54.76 | 0.345 | 13 | -- | 1.44 | -0.474 | -- | -- | -0.504 | 18.1 | 20.1 | 20 | -- | -- |
| 167.75 | 0.605 | 13 | -0.125 | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
| 63.99 | 0.374 | 13 | -- | 1.42 | -- | -- | -- | -0.577 | 18.4 | -- | -- | -- | -- |
| 161.97 | 0.593 | 13 | -- | -- | -0.373 | -- | -- | -0.548 | -- | 20 | 11 | -- | -- |
| 168.16 | 0.605 | 13 | -- | -- | -- | -- | -- | -0.603 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.32 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 13 |
| 13 | 50.01 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 14 | 50.09 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 17 |
| 32 | 50.66 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 33 | 50.66 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 39 | 50.72 | wind | 3.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 43 | 50.76 | temperature | 20.0 | 10 | > th | dose independent | sin | 10 | NA |
| 46 | 50.78 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 49 | 50.79 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 20 | 13 |
| 53 | 50.81 | temperature | 20.0 | 10 | < th | dose independent | sin | 10 | NA |
| 54 | 50.81 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 58 | 50.83 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 20 | 13 |
| 83 | 50.92 | temperature | 20.0 | 90 | < th | dose independent | sin | 11 | NA |
| 88 | 50.94 | wind | 3.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 114 | 51.00 | temperature | 20.0 | 10 | < th | dose independent | rect. | 20 | 14 |
| 127 | 51.03 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 13 |
| 143 | 51.07 | temperature | 20.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 146 | 51.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 9 |
| 159 | 51.10 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 9 |
| 176 | 51.13 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 190 | 51.15 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 205 | 51.18 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 221 | 51.21 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 225 | 51.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 230 | 51.23 | wind | 3.0 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 260 | 51.28 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 272 | 51.29 | wind | 9.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 290 | 51.33 | wind | 1.0 | 14400 | > th | dose dependent | sin | 10 | NA |
| 305 | 51.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 316 | 51.37 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 341 | 51.40 | temperature | 20.0 | 10 | < th | dose independent | rect. | 18 | 16 |
| 355 | 51.42 | temperature | 20.0 | 90 | < th | dose independent | rect. | 19 | 12 |
| 431 | 51.53 | temperature | 20.0 | 10 | < th | dose independent | rect. | 18 | 12 |
| 511 | 51.66 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 524 | 51.69 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 528 | 51.69 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 22 |
| 542 | 51.70 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 18 |
| 633 | 51.82 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 638 | 51.83 | temperature | 20.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 653 | 51.85 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 658 | 51.85 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 12 |
| 680 | 51.89 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 683 | 51.89 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 3 |
| 688 | 51.90 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 12 |
| 711 | 51.93 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 742 | 51.98 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 745 | 51.98 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 771 | 52.02 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 13 |
| 805 | 52.07 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 875 | 52.17 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 20 |
| 939 | 52.26 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 963 | 52.31 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 16 |