BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0799700 Os03g0799700|AK109922
(504 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0799700 GTP1/OBG subdomain containing protein 935 0.0
Os07g0669200 GTP1/OBG subdomain containing protein 163 2e-40
Os11g0704300 GTP1/OBG subdomain containing protein 133 4e-31
AK110156 92 9e-19
>Os03g0799700 GTP1/OBG subdomain containing protein
Length = 504
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/504 (93%), Positives = 469/504 (93%)
Query: 1 MPLLLHPRFPSSXXXXXXXXXXXXXXXXXXXLRLPELHATRRRRNNVACRATRAREAPPQ 60
MPLLLHPRFPSS LRLPELHATRRRRNNVACRATRAREAPPQ
Sbjct: 1 MPLLLHPRFPSSHAAACAHRAAAAHRDARPALRLPELHATRRRRNNVACRATRAREAPPQ 60
Query: 61 QQNTAAALSKEAHKYFDHAVVTVRAGDGGHGAVLAMPASPSTDAPKSPRRRSDKGKRSGV 120
QQNTAAALSKEAHKYFDHAVVTVRAGDGGHGAVLAMPASPSTDAPKSPRRRSDKGKRSGV
Sbjct: 61 QQNTAAALSKEAHKYFDHAVVTVRAGDGGHGAVLAMPASPSTDAPKSPRRRSDKGKRSGV 120
Query: 121 KKVSYKRNYDGSVALPMGGHGGDVVVYADEAEETLLRFHEKARYCAKRGGNVGATGTLSS 180
KKVSYKRNYDGSVALPMGGHGGDVVVYADEAEETLLRFHEKARYCAKRGGNVGATGTLSS
Sbjct: 121 KKVSYKRNYDGSVALPMGGHGGDVVVYADEAEETLLRFHEKARYCAKRGGNVGATGTLSS 180
Query: 181 RMHNGFAGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRR 240
RMHNGFAGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRR
Sbjct: 181 RMHNGFAGETLRIPVPVGTVVKRKKGAVLADLAHPGDEVIVARGGQGGISLIDVPEYRRR 240
Query: 241 KAMVLSPNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLAR 300
KAMVLSPNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLAR
Sbjct: 241 KAMVLSPNIMRDVSDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLAR 300
Query: 301 PDIADYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 360
PDIADYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLR
Sbjct: 301 PDIADYPFTTLMPNLGRLGGDPALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLR 360
Query: 361 RTRXXXXXXXXXXXXXXXXYKIVREELRMYNPQYLERPYVVVLNKIDLPKAQDRLSSLAF 420
RTR YKIVREELRMYNPQYLERPYVVVLNKIDLPKAQDRLSSLAF
Sbjct: 361 RTRVIVHVVDAAADDPVDDYKIVREELRMYNPQYLERPYVVVLNKIDLPKAQDRLSSLAF 420
Query: 421 EISSIGCEECDGNNTSEDSLNGNTGEHNTSSETKVEGGEKELRDYPRPQAVVGASVLKHI 480
EISSIGCEECDGNNTSEDSLNGNTGEHNTSSETKVEGGEKELRDYPRPQAVVGASVLKHI
Sbjct: 421 EISSIGCEECDGNNTSEDSLNGNTGEHNTSSETKVEGGEKELRDYPRPQAVVGASVLKHI 480
Query: 481 GIDEMLKEIRAALRKCFDHRLPEP 504
GIDEMLKEIRAALRKCFDHRLPEP
Sbjct: 481 GIDEMLKEIRAALRKCFDHRLPEP 504
>Os07g0669200 GTP1/OBG subdomain containing protein
Length = 752
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 153/287 (53%), Gaps = 27/287 (9%)
Query: 143 DVVVYADEAEETLLRFHEKARYCAKRGGNVGATGTLSSRMHNGFAGETLRIPVPVGTVVK 202
+V V D +LL F + + A RG + R G G+ + + VP GTVV+
Sbjct: 337 NVFVEVDGDMNSLLPFRKSVHFRAGRGAHG------QGRQQAGAKGDDVVVKVPPGTVVR 390
Query: 203 RKKGAV-LADLAHPGDEVIVARGGQGGISLIDVPEYRRRKAMVLSPNIMRDVSDRVLIHG 261
G V L +L PG + L+ R A S + + R+ G
Sbjct: 391 SAAGDVELLELMRPGQRAL----------LLPGGRGGRGNAAFKSGT---NKAPRIAEKG 437
Query: 262 QPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGGD 321
+ G E+ ++L L++VADVG+VG PNAGKSTLL+AI+ A+P IA+YPFTTL+PNLG +
Sbjct: 438 EKGPEMWIDLELKLVADVGIVGAPNAGKSTLLTAISAAKPTIANYPFTTLLPNLGVV--- 494
Query: 322 PALGALQFSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRXXXXXXXXXXXXXXXXYK 381
+L F + +ADLPGL+EGAH G GLG FLRH R ++
Sbjct: 495 ----SLDFDATMVVADLPGLLEGAHRGYGLGHEFLRHSERCSVLVHVVDGSGEQPEYEFE 550
Query: 382 IVREELRMYNPQYLERPYVVVLNKIDLPKAQDRLSSLAFEISSIGCE 428
VR EL +++P +++PY+VV NK+DLP+A +R + ++ + G E
Sbjct: 551 AVRLELELFSPSLVDKPYIVVYNKMDLPEASERWNKFQEKLQAEGIE 597
>Os11g0704300 GTP1/OBG subdomain containing protein
Length = 528
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 120/224 (53%), Gaps = 20/224 (8%)
Query: 209 LADLAHPGDEVIVARGGQGGISLIDVPEYRRRKAMVLSPNIMRDVSDRVLIHGQPGEEVS 268
+A++ PG +I+ARGG+GG+ + K M LS ++ L G PG E
Sbjct: 278 VAEMTKPGQRLIIARGGEGGLGNACI-----LKEMWLS-KAHKEEEMASLSTGHPGTETY 331
Query: 269 LELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMPNLGRLGGDPALGALQ 328
L L L+ +ADVGLVG+PNAGKSTLLSA++ ARP+IADY FTTL PN+G L +
Sbjct: 332 LILELKSIADVGLVGMPNAGKSTLLSALSRARPEIADYAFTTLRPNIGSL-------TYE 384
Query: 329 FSSEATLADLPGLIEGAHLGKGLGRNFLRHLRRTRXXXXXXXXXXXXXXXX----YKIVR 384
+AD+PGLI+GAH +GLG FLRH+ RT+ ++ +R
Sbjct: 385 DYFSVKVADIPGLIKGAHENRGLGHAFLRHIERTKVLAYVLDLAATLNGRKGVPPWEQLR 444
Query: 385 E---ELRMYNPQYLERPYVVVLNKIDLPKAQDRLSSLAFEISSI 425
+ EL Y +RP ++V NKID A + L + +
Sbjct: 445 DLVVELEHYQEGLTKRPSLIVANKIDEEGADEMYEELKKRVQGV 488
>AK110156
Length = 1002
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 104/226 (46%), Gaps = 30/226 (13%)
Query: 254 SDRVLIHGQPGEEVSLELILRVVADVGLVGLPNAGKSTLLSAITLARPDIADYPFTTLMP 313
S + G+ GE + + L L+ +D+GLVGLPNAGKST+L +I+ ++ + + FTTL P
Sbjct: 737 SPKFATKGEWGEALEVMLELKRPSDIGLVGLPNAGKSTILRSISASKAQVGHWRFTTLSP 796
Query: 314 NLG--RLGGDPALGALQFS--------------------SEA-----TLADLPGLIEGAH 346
NLG RLG D ++ + S S+A L+D+PGLI+GA
Sbjct: 797 NLGVVRLGQDGSVMGVDDSEVQEGYGHDRDGSVADADMPSDAEEFRLVLSDIPGLIDGAA 856
Query: 347 LGKGLGRNFLRHLRRTRXXXXXXXXXXXXXXXXYKIVREELRMYNPQYLERPYVVVLNKI 406
+GLG FLRH+ R ++ EL Y + +V++NK
Sbjct: 857 DNRGLGHTFLRHIERCSILAYVLDLTEPEPWKDLGVLHNELASYRSDLPAKARLVIINKA 916
Query: 407 DLPKAQDRLSSLAFEISSIGCEECDGNNTSEDSLNGNTGEHNTSSE 452
D D + + ++ I + N ED TGE N +E
Sbjct: 917 DQFTTPDEIEAAKAKVDRIRRQV---NEIWEDQQALRTGEVNQGAE 959
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,108,709
Number of extensions: 843940
Number of successful extensions: 3001
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2993
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)