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Os11g0704300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GTP1/OBG subdomain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.35 (0.022) R2 : 0.642
β1 : 0.93 (0.08) R2dD : 0.11 R2D : 0.0666
β2 : 1.37 (0.0714) R2dC : 0.504 R2C : -0.393
β3 : -1.97 (0.0742) R2dE : 0.968 R2E : 0.0249
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.112 (0.047) R2dN8 : 0.00629 R2N8 : -0.0213
σ : 0.407
deviance : 76.47
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_____
C
peak time of C : 8.72
E
wheather : temperature
threshold : 3.219
memory length : 331
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 23.3
open length of G : 8.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
76.09 0.41 8.34 0.986 1.36 -1.98 -0.167 0.593 0.132 8.65 4.397 323 23.2 8.16
76.46 0.407 8.35 0.944 1.37 -1.98 0.0988 -- 0.122 8.69 3.303 329 23.3 8.15
76.12 0.406 8.34 0.965 1.38 -2.01 -- 0.523 0.129 8.63 4.039 330 23.2 8.17
76.47 0.407 8.35 0.93 1.37 -1.97 -- -- 0.112 8.72 3.219 331 23.3 8.1
106.76 0.481 8.34 1.49 -- -1.68 -- 2.07 0.301 -- 1.684 1756 21.5 8.42
110.82 0.494 8.42 0.811 1.21 -- -0.0594 -- -0.0411 14.6 -- -- -- --
110.83 0.493 8.42 0.81 1.21 -- -- -- -0.0414 14.6 -- -- -- --
103.24 0.473 8.4 1.16 -- -1.74 -- -- 0.0713 -- 2.391 1883 20.9 7.13
98.55 0.462 8.38 -- 1.24 -1.8 -- -- -0.012 8.76 -0.4448 327 23.3 7.85
196.33 0.655 8.43 0.758 -- -- -- -- -0.0719 -- -- -- -- --
128.11 0.529 8.44 -- 1.19 -- -- -- -0.132 14.6 -- -- -- --
127.37 0.526 8.41 -- -- -1.18 -- -- -0.0149 -- -1.227 190 22.5 8.37
211.49 0.679 8.45 -- -- -- -- -- -0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 77.59 temperature 15.0 270 > th dose independent rect. 1 17
2 78.06 temperature 10.0 270 > th dose dependent rect. 24 8
4 78.35 wind 9.0 270 < th dose dependent rect. 24 7
5 78.81 wind 9.0 270 < th dose independent rect. 7 17
6 78.83 radiation 20.0 270 < th dose independent rect. 24 8
7 78.86 temperature 15.0 90 > th dose independent rect. 3 16
8 78.86 radiation 1.0 270 < th dose dependent rect. 18 7
9 78.95 wind 9.0 90 < th dose dependent rect. 2 6
17 79.02 radiation 30.0 270 < th dose dependent rect. 24 8
18 79.03 wind 5.0 270 < th dose independent rect. 24 7
19 79.03 temperature 10.0 270 > th dose independent rect. 18 7
20 79.03 humidity 50.0 270 > th dose independent rect. 18 7
21 79.03 radiation 20.0 270 < th dose independent rect. 18 7
25 79.03 atmosphere 1015.0 270 < th dose independent rect. 1 17
26 79.04 wind 9.0 270 < th dose independent rect. 18 7
28 79.05 precipitation 0.1 270 < th dose independent rect. 24 7
29 79.05 precipitation 0.1 270 < th dose dependent rect. 24 7
30 79.06 radiation 1.0 270 < th dose independent rect. 18 7
33 79.13 atmosphere 995.0 270 > th dose independent rect. 18 7
34 79.15 precipitation 0.1 270 < th dose independent rect. 1 17
35 79.15 precipitation 0.1 270 < th dose dependent rect. 1 17
40 79.27 radiation 1.0 270 < th dose dependent rect. 5 20
44 79.45 atmosphere 1010.0 270 < th dose independent rect. 24 7
45 79.49 humidity 70.0 270 > th dose independent rect. 24 7
47 79.50 precipitation 0.1 270 < th dose independent rect. 18 7
49 79.50 precipitation 0.1 270 < th dose dependent rect. 18 7
54 79.58 temperature 10.0 270 > th dose independent rect. 24 7
56 79.58 temperature 30.0 270 < th dose independent rect. 24 7
57 79.58 humidity 50.0 270 > th dose independent rect. 24 7
59 79.58 atmosphere 995.0 270 > th dose independent rect. 24 7
61 79.58 temperature 10.0 270 > th dose independent rect. 7 17
63 79.62 atmosphere 995.0 270 > th dose independent rect. 1 17
67 79.76 temperature 30.0 270 < th dose independent rect. 18 7
71 79.83 precipitation 0.1 270 < th dose independent rect. 7 17
72 79.83 precipitation 0.1 270 < th dose dependent rect. 7 17
77 79.98 wind 9.0 10 < th dose dependent rect. 2 7
79 80.05 wind 5.0 90 < th dose independent rect. 2 6
81 80.09 wind 9.0 270 < th dose independent rect. 6 19
83 80.11 temperature 10.0 270 > th dose independent rect. 5 9
84 80.11 atmosphere 995.0 270 > th dose independent rect. 5 9
85 80.11 atmosphere 1015.0 270 < th dose independent rect. 5 9
86 80.11 temperature 10.0 270 > th dose independent rect. 14 15
91 80.17 wind 9.0 270 < th dose independent rect. 5 9
93 80.19 precipitation 0.1 270 < th dose independent rect. 5 9
94 80.19 precipitation 0.1 270 < th dose dependent rect. 5 9
98 80.25 precipitation 0.1 90 < th dose independent rect. 2 6
99 80.25 precipitation 0.1 90 < th dose dependent rect. 2 6
107 80.33 radiation 30.0 90 < th dose independent rect. 2 7
123 80.36 atmosphere 1015.0 90 < th dose independent rect. 3 16
141 80.48 wind 9.0 270 < th dose independent rect. 1 17
142 80.48 temperature 10.0 270 > th dose dependent rect. 1 18
197 80.73 temperature 10.0 90 > th dose independent rect. 2 6
199 80.73 temperature 30.0 90 < th dose independent rect. 2 6
200 80.73 humidity 50.0 90 > th dose independent rect. 2 6
202 80.73 atmosphere 995.0 90 > th dose independent rect. 2 6
208 80.77 precipitation 0.1 10 < th dose independent rect. 2 7
209 80.77 precipitation 0.1 10 < th dose dependent rect. 2 7
212 80.81 atmosphere 1010.0 270 < th dose independent rect. 11 8
234 80.86 precipitation 0.1 270 < th dose independent rect. 14 15
235 80.86 precipitation 0.1 270 < th dose dependent rect. 14 15
239 80.87 radiation 40.0 90 < th dose dependent rect. 3 16
241 80.88 temperature 15.0 270 > th dose independent rect. 11 8
258 80.90 temperature 10.0 270 > th dose independent rect. 6 19
286 80.98 humidity 50.0 270 > th dose dependent rect. 18 7
291 81.03 wind 7.0 10 < th dose independent rect. 2 7
298 81.10 precipitation 0.1 270 < th dose independent rect. 6 19
299 81.10 humidity 50.0 270 > th dose dependent rect. 24 7
300 81.10 precipitation 0.1 270 < th dose dependent rect. 6 19
327 81.19 radiation 40.0 270 < th dose independent rect. 13 17
334 81.26 precipitation 0.1 10 < th dose independent rect. 9 17
338 81.26 precipitation 0.1 10 < th dose dependent rect. 9 17
345 81.28 temperature 10.0 10 > th dose independent rect. 2 7
347 81.28 temperature 30.0 10 < th dose independent rect. 2 7
348 81.28 humidity 50.0 10 > th dose independent rect. 2 7
350 81.28 atmosphere 995.0 10 > th dose independent rect. 2 7
351 81.28 atmosphere 1015.0 10 < th dose independent rect. 2 7
352 81.28 temperature 10.0 10 > th dose independent rect. 9 17
355 81.30 wind 9.0 10 < th dose independent rect. 9 17
358 81.33 wind 1.0 270 > th dose independent rect. 18 7
365 81.36 temperature 10.0 10 > th dose dependent rect. 2 7
369 81.42 wind 1.0 270 > th dose independent rect. 11 8
372 81.44 wind 9.0 90 < th dose independent rect. 3 16
379 81.47 humidity 50.0 270 > th dose independent rect. 19 16
384 81.48 temperature 10.0 270 > th dose independent rect. 19 16
385 81.48 atmosphere 995.0 270 > th dose independent rect. 19 16
386 81.49 atmosphere 995.0 90 > th dose independent rect. 3 16
416 81.61 humidity 50.0 270 > th dose independent rect. 6 7
432 81.70 radiation 1.0 270 < th dose independent rect. 6 19
441 81.75 wind 9.0 270 < th dose independent rect. 19 16
459 81.78 wind 9.0 270 < th dose independent rect. 14 15
471 81.84 atmosphere 995.0 270 > th dose independent rect. 13 17
473 81.86 radiation 1.0 270 < th dose independent rect. 8 17
479 81.89 wind 9.0 270 < th dose dependent rect. 2 3
481 81.90 radiation 40.0 10 < th dose independent rect. 2 7
506 82.01 humidity 50.0 270 > th dose dependent rect. 1 5
516 82.09 temperature 10.0 1440 > th dose independent rect. 3 7
519 82.09 atmosphere 995.0 1440 > th dose independent rect. 3 7
520 82.09 temperature 10.0 1440 > th dose independent rect. 10 17
546 82.17 humidity 50.0 90 > th dose dependent rect. 2 7
552 82.24 wind 9.0 270 < th dose independent rect. 5 21
608 82.41 precipitation 0.1 270 < th dose independent rect. 12 7
609 82.41 precipitation 0.1 270 < th dose dependent rect. 12 7
612 82.45 atmosphere 995.0 270 > th dose independent rect. 12 7
625 82.52 wind 5.0 270 < th dose independent rect. 2 3
627 82.52 atmosphere 1015.0 270 < th dose independent rect. 13 17
635 82.64 precipitation 0.1 270 < th dose independent rect. 2 3
636 82.64 precipitation 0.1 270 < th dose dependent rect. 2 3
641 82.66 radiation 40.0 10 < th dose dependent rect. 3 17
649 82.69 atmosphere 995.0 90 > th dose independent rect. 8 18
666 82.74 precipitation 0.1 270 < th dose independent rect. 19 17
668 82.74 precipitation 0.1 270 < th dose dependent rect. 19 17
695 82.80 radiation 20.0 90 < th dose independent rect. 2 17
742 82.93 radiation 40.0 90 < th dose independent rect. 3 16
804 83.07 wind 9.0 270 < th dose independent rect. 12 7
809 83.09 precipitation 0.1 10 < th dose independent rect. 3 17
811 83.09 precipitation 0.1 10 < th dose dependent rect. 3 17
820 83.14 temperature 10.0 270 > th dose independent rect. 2 3
822 83.14 temperature 30.0 270 < th dose independent rect. 2 3
823 83.14 humidity 50.0 270 > th dose independent rect. 2 3
826 83.14 atmosphere 995.0 270 > th dose independent rect. 2 3
827 83.14 atmosphere 1010.0 270 < th dose independent rect. 2 3
829 83.14 radiation 20.0 270 < th dose independent rect. 2 3
833 83.14 temperature 10.0 270 > th dose independent rect. 5 21
843 83.17 radiation 40.0 270 < th dose dependent rect. 2 3
875 83.25 radiation 1.0 270 < th dose independent rect. 2 3
888 83.28 atmosphere 995.0 10 > th dose independent rect. 9 17
945 83.40 wind 9.0 10 < th dose independent rect. 20 7
955 83.43 temperature 10.0 10 > th dose independent rect. 20 7
956 83.43 temperature 30.0 10 < th dose independent rect. 20 7
957 83.43 humidity 50.0 10 > th dose independent rect. 20 7
960 83.43 atmosphere 995.0 10 > th dose independent rect. 20 7
961 83.43 radiation 1.0 10 < th dose independent rect. 20 7
966 83.43 temperature 10.0 10 > th dose independent rect. 3 17
968 83.43 atmosphere 1015.0 10 < th dose independent rect. 3 17
971 83.43 radiation 1.0 10 < th dose dependent rect. 20 7