Os03g0781000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-dependent nucleic acid-binding protein engD.
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Os03g0781000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-dependent nucleic acid-binding protein engD.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.4 | 0.65 | 11 | -2.22 | 2.18 | 1.61 | 1.28 | 3.4 | -1.41 | 21.5 | 29.09 | 248 | -- | -- |
| 203.9 | 0.665 | 11 | -2.26 | 2.14 | 1.62 | 0.964 | -- | -1.46 | 21.5 | 26.68 | 275 | -- | -- |
| 196.66 | 0.653 | 11 | -2.26 | 2.15 | 1.62 | -- | 2.75 | -1.41 | 21.4 | 30.33 | 269 | -- | -- |
| 204.62 | 0.666 | 11 | -2.25 | 2.15 | 1.5 | -- | -- | -1.4 | 21.4 | 27.05 | 276 | -- | -- |
| 291.56 | 0.795 | 10.9 | -2.18 | -- | 2.28 | -- | 3.27 | -1.53 | -- | -0.1506 | 938 | -- | -- |
| 230.48 | 0.712 | 10.9 | -2.25 | 2.12 | -- | 0.883 | -- | -1.32 | 20.5 | -- | -- | -- | -- |
| 232.97 | 0.715 | 10.9 | -2.28 | 2.12 | -- | -- | -- | -1.32 | 20.5 | -- | -- | -- | -- |
| 287.88 | 0.79 | 11 | -2.5 | -- | 2.37 | -- | -- | -1.64 | -- | -3.128 | 939 | -- | -- |
| 339.64 | 0.858 | 10.9 | -- | 2.22 | 1.56 | -- | -- | -1.16 | 21.2 | 35 | 230 | -- | -- |
| 484.48 | 1.03 | 10.9 | -2.29 | -- | -- | -- | -- | -1.34 | -- | -- | -- | -- | -- |
| 370.2 | 0.9 | 10.9 | -- | 2.13 | -- | -- | -- | -1.06 | 20.4 | -- | -- | -- | -- |
| 450.88 | 0.989 | 10.9 | -- | -- | 2.19 | -- | -- | -1.32 | -- | -11.57 | 912 | -- | -- |
| 623 | 1.17 | 10.8 | -- | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 181.81 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 2 | 181.96 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 20 |
| 3 | 182.23 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 5 | 182.53 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 18 |
| 6 | 182.57 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 8 | 183.31 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 22 |
| 9 | 183.67 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 11 | 183.83 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 15 | 184.08 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 18 | 184.65 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 21 | 184.77 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 17 |
| 29 | 185.11 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 58 | 186.38 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 59 | 186.44 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 18 |
| 66 | 186.70 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 6 | 17 |
| 70 | 186.91 | radiation | 30.0 | 270 | < th | dose independent | rect. | 4 | 13 |
| 86 | 187.36 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 17 |
| 105 | 187.90 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 19 |
| 106 | 187.92 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 9 |
| 120 | 188.36 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 124 | 188.55 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 5 |
| 132 | 188.72 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 139 | 188.86 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 142 | 188.94 | radiation | 30.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 144 | 188.97 | radiation | 30.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 180 | 189.57 | temperature | 30.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 191 | 189.71 | radiation | 1.0 | 90 | < th | dose dependent | sin | 8 | NA |
| 209 | 190.09 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 213 | 190.14 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 7 | 3 |
| 216 | 190.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 217 | 190.18 | temperature | 10.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 218 | 190.18 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 227 | 190.32 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 257 | 190.88 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 6 |
| 258 | 190.88 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 260 | 190.93 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 323 | 191.21 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 3 |
| 328 | 191.23 | humidity | 70.0 | 30 | > th | dose independent | rect. | 6 | 4 |
| 337 | 191.35 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 347 | 191.48 | radiation | 1.0 | 90 | > th | dose independent | sin | 8 | NA |
| 385 | 191.68 | radiation | 1.0 | 90 | < th | dose independent | sin | 8 | NA |
| 387 | 191.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 441 | 191.95 | radiation | 30.0 | 270 | > th | dose dependent | no | NA | NA |
| 577 | 192.18 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 580 | 192.22 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 10 |
| 585 | 192.26 | temperature | 25.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 586 | 192.27 | radiation | 40.0 | 270 | < th | dose independent | sin | 5 | NA |
| 587 | 192.27 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 615 | 192.39 | temperature | 25.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 616 | 192.39 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 618 | 192.40 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 11 |
| 627 | 192.46 | radiation | 40.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 630 | 192.50 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 4 |
| 631 | 192.50 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 636 | 192.53 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 9 | 1 |
| 669 | 192.66 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 671 | 192.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 675 | 192.71 | temperature | 30.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 683 | 192.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 684 | 192.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 687 | 192.79 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 10 |
| 690 | 192.82 | radiation | 40.0 | 270 | > th | dose independent | sin | 5 | NA |
| 700 | 192.88 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 710 | 192.98 | radiation | 40.0 | 270 | > th | dose independent | rect. | 14 | 23 |
| 716 | 193.02 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 19 |
| 718 | 193.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 735 | 193.10 | wind | 5.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 760 | 193.33 | wind | 7.0 | 30 | < th | dose independent | rect. | 9 | 21 |
| 795 | 193.48 | radiation | 40.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 806 | 193.56 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 830 | 193.61 | wind | 1.0 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 835 | 193.64 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 840 | 193.67 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 12 |