BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0781000 Os03g0781000|AK065910
         (98 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56050.1  | chr1:20963793-20966181 FORWARD LENGTH=422          142   3e-35
AT1G30580.1  | chr1:10831953-10835454 REVERSE LENGTH=395           89   6e-19

>AT1G56050.1 | chr1:20963793-20966181 FORWARD LENGTH=422
          Length = 421

 Score =  142 bits (358), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 76/81 (93%)

Query: 10  VENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGAS 69
           VENGKAQAANFPFCTI PNVG+VA+PD+RL VLSKLS S++T+P SIE VDIAGLVKGAS
Sbjct: 74  VENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVPASIEFVDIAGLVKGAS 133

Query: 70  KGEGLGNQFLSNIREVDSILQ 90
           +GEGLGN+FLS+IREVDSILQ
Sbjct: 134 QGEGLGNKFLSHIREVDSILQ 154



>AT1G30580.1 | chr1:10831953-10835454 REVERSE LENGTH=395
          Length = 394

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/79 (56%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 17  AANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGN 76
           A NFPFCTI PN   V IPD R   L +  K K  IP  +E+ DIAGLV+GA +G+GLGN
Sbjct: 51  AENFPFCTIEPNEARVNIPDERFDWLCQTYKPKSEIPAFLEIHDIAGLVRGAHEGQGLGN 110

Query: 77  QFLSNIREVDSI---LQAF 92
            FLS+IR VD I   L+AF
Sbjct: 111 NFLSHIRAVDGIFHVLRAF 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,992,531
Number of extensions: 66419
Number of successful extensions: 225
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 11,106,569
Length adjustment: 68
Effective length of query: 30
Effective length of database: 9,242,281
Effective search space: 277268430
Effective search space used: 277268430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)