BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0781000 Os03g0781000|AK065910
         (98 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0781000  Similar to GTP-dependent nucleic acid-binding ...   201   1e-52
Os08g0199300  Similar to YyaF/YCHF TRANSFAC/OBG family small...    87   3e-18

>Os03g0781000 Similar to GTP-dependent nucleic acid-binding protein engD
          Length = 98

 Score =  201 bits (511), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  HEFFCQRCQVENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVD 60
          HEFFCQRCQVENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVD
Sbjct: 1  HEFFCQRCQVENGKAQAANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVD 60

Query: 61 IAGLVKGASKGEGLGNQFLSNIREVDSILQAFSGCAMF 98
          IAGLVKGASKGEGLGNQFLSNIREVDSILQAFSGCAMF
Sbjct: 61 IAGLVKGASKGEGLGNQFLSNIREVDSILQAFSGCAMF 98



>Os08g0199300 Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA
           binding domain TGS (Fragment)
          Length = 394

 Score = 87.0 bits (214), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 44/79 (55%), Positives = 53/79 (67%), Gaps = 3/79 (3%)

Query: 17  AANFPFCTINPNVGVVAIPDARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGN 76
           A NFPFCTI+PN   V +PD R   L +L K K  +   +E+ DIAGLV+GA  GEGLGN
Sbjct: 51  AENFPFCTIDPNEARVYVPDERFDWLCQLYKPKSEVSAYLEINDIAGLVRGAHAGEGLGN 110

Query: 77  QFLSNIREVDSI---LQAF 92
            FLS+IR VD I   L+AF
Sbjct: 111 AFLSHIRAVDGIFHVLRAF 129



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,979,646
Number of extensions: 96263
Number of successful extensions: 289
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 289
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)