Os08g0199300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA binding domain TGS (Fragment).
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Os08g0199300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to YyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA binding domain TGS (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.08 | 0.235 | 10.9 | 0.316 | 0.489 | 0.548 | 0.409 | -1.53 | -0.0491 | 16 | 25.7 | 97 | -- | -- |
| 25.72 | 0.236 | 10.9 | 0.483 | 0.5 | 0.424 | 0.202 | -- | -0.00782 | 15.9 | 25.63 | 121 | -- | -- |
| 25.48 | 0.235 | 10.9 | 0.35 | 0.486 | 0.54 | -- | -1.17 | -0.0402 | 15.9 | 25.73 | 101 | -- | -- |
| 25.83 | 0.237 | 10.9 | 0.483 | 0.499 | 0.436 | -- | -- | -0.00655 | 15.8 | 25.69 | 122 | -- | -- |
| 33.27 | 0.269 | 10.9 | 0.21 | -- | 1.01 | -- | -1.63 | -0.0995 | -- | 25.2 | 138 | -- | -- |
| 28.49 | 0.25 | 10.9 | 0.546 | 0.667 | -- | 0.364 | -- | 0.0124 | 15.9 | -- | -- | -- | -- |
| 28.87 | 0.252 | 10.9 | 0.551 | 0.668 | -- | -- | -- | 0.0144 | 15.9 | -- | -- | -- | -- |
| 34.31 | 0.273 | 10.9 | 0.397 | -- | 0.859 | -- | -- | -0.0537 | -- | 25.1 | 138 | -- | -- |
| 31.75 | 0.262 | 10.9 | -- | 0.434 | 0.558 | -- | -- | -0.0661 | 15.8 | 25.5 | 121 | -- | -- |
| 53.41 | 0.342 | 10.9 | 0.523 | -- | -- | -- | -- | -0.00343 | -- | -- | -- | -- | -- |
| 36.87 | 0.284 | 10.9 | -- | 0.658 | -- | -- | -- | -0.0469 | 15.9 | -- | -- | -- | -- |
| 38.39 | 0.289 | 10.9 | -- | -- | 0.915 | -- | -- | -0.106 | -- | 25 | 143 | -- | -- |
| 60.64 | 0.363 | 10.9 | -- | -- | -- | -- | -- | -0.0615 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 3 | 23.91 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 3 |
| 5 | 23.92 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 1 |
| 15 | 24.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 18 | 24.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 22 | 24.34 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 6 |
| 37 | 24.53 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 38 | 24.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 8 |
| 46 | 24.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 9 |
| 70 | 24.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 8 |
| 172 | 24.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 201 | 24.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 8 |
| 223 | 24.99 | temperature | 25 | 90 | < th | dose dependent | sin | 10 | NA |
| 238 | 25.00 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 267 | 25.05 | humidity | 80 | 4320 | < th | dose independent | rect. | 22 | 2 |
| 311 | 25.09 | humidity | 80 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 332 | 25.11 | humidity | 70 | 720 | > th | dose independent | rect. | 10 | 1 |
| 394 | 25.17 | humidity | 70 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 398 | 25.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 416 | 25.18 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 18 |
| 440 | 25.19 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 441 | 25.20 | wind | 1 | 43200 | > th | dose independent | rect. | 20 | 15 |
| 489 | 25.23 | humidity | 70 | 720 | < th | dose independent | rect. | 10 | 5 |
| 508 | 25.24 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 5 |
| 509 | 25.24 | humidity | 70 | 720 | > th | dose independent | rect. | 24 | 14 |
| 531 | 25.24 | temperature | 25 | 30 | > th | dose dependent | rect. | 16 | 23 |
| 546 | 25.26 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 563 | 25.26 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 657 | 25.32 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 10 |
| 658 | 25.32 | temperature | 20 | 30 | > th | dose independent | rect. | 18 | 11 |
| 661 | 25.32 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 743 | 25.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 750 | 25.36 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 11 |
| 770 | 25.37 | wind | 1 | 43200 | > th | dose independent | sin | 7 | NA |
| 796 | 25.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 812 | 25.39 | humidity | 70 | 720 | > th | dose independent | rect. | 7 | 22 |
| 814 | 25.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 833 | 25.40 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 20 |
| 853 | 25.41 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 7 |
| 874 | 25.42 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 980 | 25.46 | humidity | 80 | 4320 | > th | dose independent | rect. | 22 | 3 |
| 986 | 25.46 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 18 |