BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0188000 Os08g0188000|AK107337
(361 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0188000 CRS1/YhbY domain containing protein 622 e-178
Os08g0174900 Similar to CRS2-associated factor 2 297 7e-81
Os01g0495900 Similar to CRS2-associated factor 1 234 9e-62
Os01g0323300 CRS1/YhbY domain containing protein 234 1e-61
Os08g0188400 74 2e-13
Os04g0464800 CRS1/YhbY domain containing protein 67 3e-11
>Os08g0188000 CRS1/YhbY domain containing protein
Length = 361
Score = 622 bits (1605), Expect = e-178, Method: Compositional matrix adjust.
Identities = 311/361 (86%), Positives = 311/361 (86%)
Query: 1 DLLLLPWRRATAAGEAIARRLNHHRAXXXXXXXXXXXXTRLAERPPRAPSXXXXXXXXDQ 60
DLLLLPWRRATAAGEAIARRLNHHRA TRLAERPPRAPS DQ
Sbjct: 1 DLLLLPWRRATAAGEAIARRLNHHRAPPFSDPDDDPPFTRLAERPPRAPSKKKKKEEEDQ 60
Query: 61 GGRIRPPEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDXXXXXXX 120
GGRIRPPEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWD
Sbjct: 61 GGRIRPPEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDGVAAAAA 120
Query: 121 XXXXXXXXXTSRXXXXXXXXXXXXXXQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHW 180
TSR QLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHW
Sbjct: 121 RGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGKGGVTHNMIDDIHNHW 180
Query: 181 KRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLM 240
KRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLM
Sbjct: 181 KRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYRGRNYDPKQRPQIPLM 240
Query: 241 LWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKT 300
LWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKT
Sbjct: 241 LWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLTRNGVYVNVVDRVREAFKT 300
Query: 301 VEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENSVSLQFSPEP 360
VEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENSVSLQFSPEP
Sbjct: 301 VEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILWRGKVKQENSVSLQFSPEP 360
Query: 361 S 361
S
Sbjct: 361 S 361
>Os08g0174900 Similar to CRS2-associated factor 2
Length = 428
Score = 297 bits (761), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 153/303 (50%), Positives = 194/303 (64%), Gaps = 21/303 (6%)
Query: 59 DQGGRIRPPEPASSDLPFDFRYSYSETDPAWRPIGFREPTRFSPFGPGRLDRPWDXXXXX 118
D+GGR A SDLPFDFR+SY+E+ P +PIG REP ++SPFGPGRLDRPW
Sbjct: 65 DRGGR----PAARSDLPFDFRFSYTESSPGDKPIGLREP-KYSPFGPGRLDRPWTGLCAP 119
Query: 119 XXXXXXXXXXXTSRXXXXXXXXXXXXXXQ----------------LVERYRHSDCSRQIN 162
+ LV + + S +QIN
Sbjct: 120 AVDTTLRDAHADDPAPAAERELEEARRRERERVLGEPLTPAERAFLVSKCQKSRTKKQIN 179
Query: 163 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILI 222
LG+ G+THNM++DIHNHWK EAVR+KCLGVPT+DM N+C LEDKTGG +I+R+ LI
Sbjct: 180 LGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIHRHGGQLI 239
Query: 223 LYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPLMKLT 282
LYRGR+Y+PK+RP IPLMLWKP P+YPRL++ +GLT E+TKE+R GL L KL
Sbjct: 240 LYRGRHYNPKKRPVIPLMLWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLA 299
Query: 283 RNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQIILW 342
+NG Y ++V VR+AF T E+VR+D + SD +KIGVKLRDLVPC+ + F EQII+W
Sbjct: 300 KNGYYASLVPMVRDAFLTDELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDKEQIIVW 359
Query: 343 RGK 345
RGK
Sbjct: 360 RGK 362
>Os01g0495900 Similar to CRS2-associated factor 1
Length = 701
Score = 234 bits (596), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 142/186 (76%)
Query: 159 RQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNI 218
RQ+N+G+ G+THNM+++IH+HWKR +IKC GV T+DMDN+C LE+K GGKVI+
Sbjct: 202 RQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDMDNVCQQLEEKVGGKVIHHQG 261
Query: 219 NILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGLNSSPL 278
++ L+RGRNY+ + RP PLMLWKP AP+YPRLV+ + DGLT ++ +++R G P+
Sbjct: 262 GVIFLFRGRNYNYRTRPIYPLMLWKPAAPVYPRLVKKIPDGLTPDEAEDMRKRGRQLPPI 321
Query: 279 MKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLLFKDEQ 338
KL +NGVY+N+V +VREAF+ ++VR+DCS + SDC+KIG KL+DLVPC L F+ E
Sbjct: 322 CKLGKNGVYLNLVKQVREAFEACDLVRVDCSGLNKSDCRKIGAKLKDLVPCTLLSFEFEH 381
Query: 339 IILWRG 344
I++WRG
Sbjct: 382 ILMWRG 387
>Os01g0323300 CRS1/YhbY domain containing protein
Length = 607
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 146/192 (76%)
Query: 154 HSDCSRQINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKV 213
H +RQ+N+G+ G+THNM++ IH HW+R E +++C GVPT+DM N+C+HLE+K+GGKV
Sbjct: 242 HISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNLCYHLEEKSGGKV 301
Query: 214 IYRNINILILYRGRNYDPKQRPQIPLMLWKPLAPIYPRLVQNVADGLTFEKTKELRNTGL 273
I+R ++ LYRGRNY+P+ RP+ PLMLWKP P+YP+L+Q +GLT E+ E+R G
Sbjct: 302 IHRVGGVVFLYRGRNYNPRTRPRYPLMLWKPATPVYPKLIQEAPEGLTKEEADEMRRRGK 361
Query: 274 NSSPLMKLTRNGVYVNVVDRVREAFKTVEVVRLDCSHVGSSDCKKIGVKLRDLVPCVPLL 333
+ P+ KL +NG+Y+ +V VR+AF+ ++V++DC + SD KKIG KLRDLVPCV L
Sbjct: 362 DLLPICKLAKNGIYIYLVRDVRDAFEGSDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLS 421
Query: 334 FKDEQIILWRGK 345
F +EQI+++RGK
Sbjct: 422 FDNEQILMFRGK 433
>Os08g0188400
Length = 126
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 2/82 (2%)
Query: 15 EAIARRLNHHRAXXXXXXXXXXXXTRLAERPPR-APSXXXXXXXXDQGGRIRPPEPASSD 73
+A+ARRL +HRA TR+ E PPR A +QGG I+ PE SD
Sbjct: 20 KALARRL-YHRAPSFSDPDDDPPFTRVTECPPRPASKPAHATKKKNQGGSIKQPELVRSD 78
Query: 74 LPFDFRYSYSETDPAWRPIGFR 95
LPF+FRYSYS+TDPAWRPIGF+
Sbjct: 79 LPFNFRYSYSKTDPAWRPIGFQ 100
>Os04g0464800 CRS1/YhbY domain containing protein
Length = 1042
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 160 QINLGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNIN 219
++ +GK GVT +++ IH W+ AE V+I+C V ++M LE KTGG VI+R+ +
Sbjct: 159 RLKVGKAGVTEGIVNGIHERWRNAELVKIRCDDVSAMNMKRTHEILERKTGGLVIWRSGS 218
Query: 220 ILILYRGRNY 229
+ILYRG +Y
Sbjct: 219 TIILYRGTDY 228
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,928,434
Number of extensions: 482609
Number of successful extensions: 928
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 931
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 259
Effective length of database: 11,709,973
Effective search space: 3032883007
Effective search space used: 3032883007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)