Os01g0323300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : CRS1/YhbY domain containing protein.
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Os01g0323300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : CRS1/YhbY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 95.05 | 0.458 | 10.5 | -0.807 | 2.35 | -3.15 | -0.014 | 0.945 | -0.547 | 15.1 | 11.01 | 221 | 3.12 | 3.42 |
| 96.26 | 0.457 | 10.5 | -0.849 | 2.35 | -3.15 | -0.29 | -- | -0.544 | 15.1 | 11.16 | 221 | 3.15 | 3.46 |
| 94.9 | 0.454 | 10.5 | -0.807 | 2.36 | -3.15 | -- | 0.929 | -0.542 | 15.1 | 10.12 | 224 | 3.15 | 3.42 |
| 96.51 | 0.458 | 10.5 | -0.849 | 2.36 | -3.13 | -- | -- | -0.552 | 15.1 | 11.39 | 221 | 3.15 | 3.47 |
| 309.8 | 0.82 | 10.5 | -0.765 | -- | -4.35 | -- | 1.01 | -0.563 | -- | 31.67 | 162 | 2.77 | 4.25 |
| 309.2 | 0.824 | 10.6 | -0.968 | 4.04 | -- | -0.496 | -- | -0.765 | 16.5 | -- | -- | -- | -- |
| 309.86 | 0.824 | 10.6 | -0.971 | 4.03 | -- | -- | -- | -0.768 | 16.5 | -- | -- | -- | -- |
| 302.29 | 0.81 | 10.5 | -0.775 | -- | -4.11 | -- | -- | -0.501 | -- | 53.35 | 173 | 2.52 | 4.52 |
| 115.77 | 0.501 | 10.5 | -- | 2.36 | -3.09 | -- | -- | -0.454 | 15.1 | 10.4 | 227 | 3.13 | 3.38 |
| 1180.28 | 1.61 | 10.6 | -1.13 | -- | -- | -- | -- | -0.874 | -- | -- | -- | -- | -- |
| 334.72 | 0.856 | 10.6 | -- | 4.05 | -- | -- | -- | -0.66 | 16.5 | -- | -- | -- | -- |
| 320.28 | 0.834 | 10.5 | -- | -- | -4.02 | -- | -- | -0.423 | -- | 88.41 | 169 | 2.43 | 4.6 |
| 1213.87 | 1.63 | 10.5 | -- | -- | -- | -- | -- | -0.749 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.02 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 2 | 108.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 3 | 108.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 4 | 109.25 | radiation | 10.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 11 | 111.32 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 13 | 111.81 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 20 | 112.55 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 21 | 112.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 23 | 112.55 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 24 | 112.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 27 | 112.55 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 28 | 112.55 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 32 | 112.55 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 50 | 113.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 51 | 113.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 53 | 113.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 103 | 118.16 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 146 | 124.85 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 180 | 127.17 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 185 | 127.97 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 2 | 11 |
| 196 | 128.95 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 204 | 130.02 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 10 |
| 212 | 130.42 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 216 | 130.58 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 263 | 134.76 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 359 | 138.61 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 387 | 139.73 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 21 |
| 445 | 142.46 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 475 | 143.12 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 550 | 145.82 | radiation | 30.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 596 | 147.31 | wind | 7.0 | 270 | < th | dose independent | rect. | 21 | 14 |
| 616 | 148.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 626 | 148.88 | radiation | 40.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 629 | 148.97 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 9 |
| 630 | 148.97 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 9 |
| 632 | 149.13 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 2 |
| 640 | 149.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 641 | 149.60 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 642 | 149.60 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 643 | 149.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 14 |
| 644 | 149.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 669 | 150.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 670 | 150.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 671 | 150.10 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 675 | 150.16 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 699 | 151.09 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 714 | 151.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 14 |
| 732 | 152.27 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 739 | 152.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 749 | 153.03 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 3 |
| 755 | 153.29 | radiation | 1.0 | 270 | < th | dose independent | sin | 2 | NA |
| 759 | 153.43 | wind | 9.0 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 796 | 154.02 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 797 | 154.02 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 800 | 154.02 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 802 | 154.02 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 803 | 154.02 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 804 | 154.02 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 849 | 154.86 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 8 |
| 854 | 154.87 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 869 | 154.98 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 21 |
| 870 | 155.09 | radiation | 1.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 924 | 156.02 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 944 | 156.38 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 945 | 156.38 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 946 | 156.39 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 953 | 156.48 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 955 | 156.57 | wind | 9.0 | 270 | < th | dose independent | rect. | 11 | 10 |