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Os08g0188000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CRS1/YhbY domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.68 (0.0211) R2 : 0.632
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.39 (0.0914) R2dC : 1.84 R2C : -1.24
β3 : 2.24 (0.0866) R2dE : 1.81 R2E : -1.29
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.357 (0.0442) R2dN8 : 0.068 R2N8 : 0.0305
σ : 0.394
deviance : 71.71
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C
peak time of C : 11.8
E
wheather : radiation
threshold : 13.36
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 2.83
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
62.17 0.37 7.69 -0.267 2 1.9 2.35 1.46 0.308 11.6 11.47 10 2.28 --
65.34 0.376 7.7 -0.183 2.17 2.07 1.48 -- 0.34 11.7 12.48 13 2.55 --
70.69 0.395 7.7 -0.22 2.16 2.1 -- -0.604 0.29 11.8 13.48 13 2.33 --
70.66 0.391 7.68 -0.204 2.22 2.1 -- -- 0.333 11.8 12.48 13 2.6 --
94.46 0.453 7.76 -0.149 -- 1.29 -- 1.86 0.244 -- 254.9 262 0.641 --
93.67 0.454 7.71 -0.233 1.25 -- 1.87 -- 0.263 7.3 -- -- -- --
102.92 0.475 7.71 -0.195 1.26 -- -- -- 0.258 7.12 -- -- -- --
99.8 0.465 7.73 -0.208 -- 1.47 -- -- 0.287 -- 10 676 2.8 --
71.71 0.394 7.68 -- 2.39 2.24 -- -- 0.357 11.8 13.36 13 2.83 --
186.84 0.639 7.74 -0.171 -- -- -- -- 0.281 -- -- -- -- --
103.92 0.477 7.71 -- 1.26 -- -- -- 0.28 7.13 -- -- -- --
100.17 0.466 7.74 -- -- 1.5 -- -- 0.306 -- 6.158 735 3.6 --
187.61 0.639 7.74 -- -- -- -- -- 0.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.52 temperature 30.0 270 < th dose dependent rect. 4 5
2 62.81 radiation 10.0 10 < th dose dependent sin 8 NA
9 64.63 temperature 30.0 270 < th dose dependent rect. 5 3
21 66.86 temperature 25.0 270 < th dose independent rect. 4 5
22 66.95 radiation 1.0 90 < th dose independent sin 8 NA
25 67.41 radiation 1.0 30 > th dose independent sin 6 NA
26 67.43 radiation 1.0 90 > th dose independent sin 8 NA
28 67.57 precipitation 0.1 270 < th dose independent rect. 4 4
29 67.57 precipitation 0.1 270 < th dose dependent rect. 4 4
39 67.82 radiation 1.0 30 > th dose independent rect. 5 6
52 67.90 wind 7.0 270 < th dose independent rect. 4 4
68 67.99 temperature 10.0 270 > th dose independent rect. 4 4
71 67.99 humidity 50.0 270 > th dose independent rect. 4 4
73 67.99 atmosphere 995.0 270 > th dose independent rect. 4 4
74 67.99 atmosphere 1015.0 270 < th dose independent rect. 4 4
75 67.99 temperature 10.0 270 > th dose independent rect. 8 20
76 68.00 wind 1.0 90 > th dose independent rect. 1 4
84 68.14 wind 9.0 270 < th dose independent rect. 8 20
96 68.22 radiation 40.0 270 < th dose independent rect. 4 4
132 68.47 wind 7.0 90 < th dose independent rect. 11 18
136 68.65 wind 9.0 270 < th dose dependent rect. 4 4
185 69.39 precipitation 0.1 270 < th dose independent rect. 8 20
186 69.39 precipitation 0.1 270 < th dose dependent rect. 8 20
209 69.59 temperature 10.0 90 > th dose independent rect. 11 18
210 69.60 radiation 1.0 30 < th dose independent rect. 1 11
212 69.61 radiation 1.0 30 < th dose independent rect. 1 7
216 69.63 radiation 1.0 30 < th dose independent rect. 1 5
231 69.66 radiation 1.0 10 > th dose dependent sin 10 NA
239 69.90 temperature 10.0 270 > th dose independent rect. 13 10
240 69.90 temperature 10.0 270 > th dose independent rect. 23 14
241 69.90 atmosphere 995.0 270 > th dose independent rect. 23 14
247 69.96 wind 1.0 90 > th dose independent rect. 11 18
252 70.03 precipitation 0.1 90 < th dose independent rect. 11 18
253 70.03 precipitation 0.1 90 < th dose dependent rect. 11 18
270 70.11 wind 9.0 270 < th dose independent rect. 23 14
272 70.11 radiation 1.0 30 < th dose dependent rect. 1 11
275 70.13 radiation 1.0 30 < th dose dependent rect. 1 7
284 70.23 radiation 1.0 30 < th dose dependent rect. 1 5
285 70.23 temperature 10.0 10 > th dose dependent rect. 10 19
290 70.29 precipitation 0.1 270 < th dose independent rect. 18 14
292 70.29 precipitation 0.1 270 < th dose dependent rect. 18 14
300 70.33 wind 9.0 270 < th dose independent rect. 13 10
307 70.37 humidity 50.0 270 > th dose dependent rect. 5 3
309 70.40 humidity 50.0 270 > th dose dependent rect. 4 5
322 70.48 radiation 40.0 270 < th dose dependent rect. 5 3
327 70.56 atmosphere 995.0 270 > th dose independent rect. 9 19
329 70.59 temperature 10.0 270 > th dose dependent rect. 24 13
351 70.79 humidity 50.0 270 > th dose independent rect. 23 14
373 70.94 precipitation 0.1 270 < th dose independent rect. 3 20
375 70.94 precipitation 0.1 270 < th dose dependent rect. 3 20
377 70.98 wind 1.0 270 > th dose independent rect. 13 10
387 71.14 atmosphere 995.0 90 > th dose independent rect. 11 18
389 71.15 precipitation 0.1 270 < th dose independent rect. 8 11
390 71.15 precipitation 0.1 270 < th dose dependent rect. 8 11
408 71.24 wind 9.0 270 < th dose independent rect. 23 4
409 71.24 temperature 10.0 270 > th dose independent rect. 23 4
410 71.24 temperature 30.0 270 < th dose independent rect. 23 4
411 71.24 humidity 50.0 270 > th dose independent rect. 23 4
414 71.24 atmosphere 995.0 270 > th dose independent rect. 23 4
415 71.24 radiation 1.0 270 < th dose independent rect. 23 4
421 71.24 temperature 10.0 270 > th dose independent rect. 3 20
422 71.24 radiation 1.0 270 < th dose dependent rect. 23 4
431 71.25 precipitation 0.1 270 < th dose independent rect. 23 4
432 71.25 precipitation 0.1 270 < th dose dependent rect. 23 4
442 71.32 temperature 30.0 10 < th dose independent rect. 5 20
450 71.39 wind 7.0 10 < th dose independent rect. 11 18
467 71.44 atmosphere 1015.0 270 < th dose independent rect. 3 20
469 71.48 atmosphere 995.0 270 > th dose dependent rect. 5 3
472 71.50 wind 9.0 270 < th dose independent rect. 3 20
503 71.70 wind 1.0 270 > th dose independent rect. 5 3
542 71.82 atmosphere 1015.0 270 < th dose independent rect. 23 14
569 71.92 atmosphere 1015.0 270 < th dose independent rect. 4 18
575 71.95 precipitation 0.1 270 < th dose independent rect. 13 10
577 71.95 precipitation 0.1 270 < th dose dependent rect. 13 10
588 72.00 atmosphere 1015.0 90 < th dose independent rect. 5 20
611 72.12 temperature 10.0 270 > th dose independent rect. 22 6
612 72.12 temperature 30.0 270 < th dose independent rect. 22 6
613 72.12 humidity 50.0 270 > th dose independent rect. 22 6
616 72.12 atmosphere 995.0 270 > th dose independent rect. 22 6
617 72.12 radiation 1.0 270 < th dose independent rect. 22 6
622 72.12 temperature 10.0 270 > th dose independent rect. 4 18
623 72.12 radiation 1.0 270 < th dose dependent rect. 22 6
629 72.13 wind 9.0 270 < th dose independent rect. 22 6
638 72.16 temperature 20.0 270 > th dose independent rect. 8 11
654 72.24 precipitation 0.1 270 < th dose independent rect. 23 14
656 72.24 precipitation 0.1 270 < th dose dependent rect. 23 14
661 72.29 wind 9.0 270 < th dose independent rect. 4 18
680 72.38 precipitation 0.1 270 < th dose independent rect. 4 18
681 72.38 humidity 50.0 270 > th dose dependent rect. 23 4
682 72.38 precipitation 0.1 270 < th dose dependent rect. 4 18
700 72.51 atmosphere 1015.0 270 < th dose independent rect. 23 4
704 72.51 temperature 30.0 270 < th dose dependent rect. 23 4
722 72.65 radiation 40.0 90 < th dose independent rect. 11 18
777 72.80 wind 1.0 270 > th dose independent rect. 8 21
793 72.85 wind 9.0 90 < th dose independent rect. 1 4
794 72.85 temperature 10.0 90 > th dose independent rect. 1 4
796 72.85 temperature 30.0 90 < th dose independent rect. 1 4
797 72.85 humidity 50.0 90 > th dose independent rect. 1 4
800 72.85 atmosphere 995.0 90 > th dose independent rect. 1 4
801 72.85 atmosphere 1010.0 90 < th dose independent rect. 1 4
828 72.94 humidity 60.0 270 > th dose independent rect. 19 13
830 72.95 temperature 10.0 270 > th dose independent rect. 8 11
831 72.95 atmosphere 1015.0 270 < th dose independent rect. 8 11
832 72.95 wind 9.0 270 < th dose independent rect. 19 13
833 72.95 temperature 10.0 270 > th dose independent rect. 19 13
834 72.95 temperature 30.0 270 < th dose independent rect. 19 13
836 72.95 atmosphere 995.0 270 > th dose independent rect. 19 13
865 72.97 temperature 30.0 270 < th dose dependent rect. 4 14
866 72.98 wind 1.0 270 > th dose independent rect. 24 2
894 73.06 atmosphere 1010.0 30 < th dose independent rect. 11 18
903 73.11 radiation 40.0 270 < th dose independent rect. 19 13
910 73.13 precipitation 0.1 270 < th dose independent rect. 22 6
912 73.13 precipitation 0.1 270 < th dose dependent rect. 22 6
981 73.27 wind 9.0 270 < th dose independent rect. 8 11
982 73.27 precipitation 0.1 10 < th dose independent rect. 5 20
987 73.27 precipitation 0.1 10 < th dose dependent rect. 5 20