Os01g0495900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CRS2-associated factor 1.
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Os01g0495900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CRS2-associated factor 1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.06 | 0.312 | 12.2 | 0.141 | 0.474 | 1.12 | -0.697 | 2.34 | -0.526 | 20.4 | 6.544 | 621 | -- | -- |
| 45.25 | 0.313 | 12.3 | -0.184 | 0.469 | 0.959 | -0.307 | -- | -0.625 | 21.5 | 21.94 | 443 | -- | -- |
| 45.25 | 0.313 | 12.3 | 0.0571 | 0.49 | 1.02 | -- | 1.65 | -0.552 | 20.4 | 16.24 | 618 | -- | -- |
| 45.17 | 0.313 | 12.3 | -0.188 | 0.536 | 0.991 | -- | -- | -0.619 | 22.2 | 22.5 | 318 | -- | -- |
| 55.14 | 0.346 | 12.3 | -0.0704 | -- | 1.36 | -- | 1.41 | -0.624 | -- | 16.95 | 608 | -- | -- |
| 63.01 | 0.372 | 12.3 | 0.033 | 0.773 | -- | -0.0349 | -- | -0.459 | 20 | -- | -- | -- | -- |
| 63.02 | 0.372 | 12.3 | 0.034 | 0.773 | -- | -- | -- | -0.459 | 20 | -- | -- | -- | -- |
| 54.26 | 0.343 | 12.3 | -0.247 | -- | 1.23 | -- | -- | -0.668 | -- | 22.6 | 592 | -- | -- |
| 45.93 | 0.316 | 12.3 | -- | 0.548 | 0.945 | -- | -- | -0.586 | 22 | 22.6 | 311 | -- | -- |
| 95.72 | 0.457 | 12.2 | 0.0267 | -- | -- | -- | -- | -0.469 | -- | -- | -- | -- | -- |
| 63.05 | 0.371 | 12.3 | -- | 0.773 | -- | -- | -- | -0.463 | 20 | -- | -- | -- | -- |
| 55.67 | 0.348 | 12.3 | -- | -- | 1.17 | -- | -- | -0.604 | -- | 23.14 | 602 | -- | -- |
| 95.74 | 0.457 | 12.2 | -- | -- | -- | -- | -- | -0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 4 | 42.17 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 13 | 42.45 | temperature | 15 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 17 | 42.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 159 | 43.52 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 21 |
| 196 | 43.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 237 | 43.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 13 |
| 290 | 43.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 383 | 44.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 432 | 44.20 | temperature | 10 | 1440 | > th | dose dependent | sin | 0 | NA |
| 520 | 44.34 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 531 | 44.36 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 627 | 44.48 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 669 | 44.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 22 |
| 702 | 44.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 814 | 44.69 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 923 | 44.81 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |