BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0141400 Os08g0141400|AK072710
(246 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0141400 Similar to External rotenone-insensitive NADPH... 510 e-145
Os05g0331200 Similar to External rotenone-insensitive NADPH... 395 e-110
Os06g0684000 Similar to External rotenone-insensitive NADPH... 385 e-107
Os07g0564500 Pyridine nucleotide-disulphide oxidoreductase,... 67 1e-11
>Os08g0141400 Similar to External rotenone-insensitive NADPH dehydrogenase
Length = 246
Score = 510 bits (1313), Expect = e-145, Method: Compositional matrix adjust.
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 VIHLILRLHLQGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDN 60
VIHLILRLHLQGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDN
Sbjct: 1 VIHLILRLHLQGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDN 60
Query: 61 SGTLTVKEIQDVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKK 120
SGTLTVKEIQDVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKK
Sbjct: 61 SGTLTVKEIQDVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKK 120
Query: 121 ALSLVDSQVKNLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYR 180
ALSLVDSQVKNLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYR
Sbjct: 121 ALSLVDSQVKNLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYR 180
Query: 181 HLGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFG 240
HLGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFG
Sbjct: 181 HLGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFG 240
Query: 241 RDSSCI 246
RDSSCI
Sbjct: 241 RDSSCI 246
>Os05g0331200 Similar to External rotenone-insensitive NADPH dehydrogenase
Length = 575
Score = 395 bits (1015), Expect = e-110, Method: Compositional matrix adjust.
Identities = 184/236 (77%), Positives = 206/236 (87%)
Query: 11 QGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDNSGTLTVKEIQ 70
Q RRVLATDEWLRV CD VYA+GDCATI QR+VM+DI+ IFRVADKDNSG+LTVK+I+
Sbjct: 340 QANRRVLATDEWLRVHGCDDVYALGDCATITQRKVMEDIASIFRVADKDNSGSLTVKKIK 399
Query: 71 DVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKKALSLVDSQVK 130
+VL DIY RYPQVELYLK+ QM DL++ + G+A KES ELNIEEFKKAL+ VDSQVK
Sbjct: 400 NVLGDIYERYPQVELYLKTNQMKDFHDLLKDSDGNAIKESKELNIEEFKKALARVDSQVK 459
Query: 131 NLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRFRPFRYRHLGQFAPLGG 190
LPATAQVASQ+G YLA CFNKMK EENPEGP+RIRG GRHRF+PFRYRHLGQFAPLGG
Sbjct: 460 MLPATAQVASQEGAYLANCFNKMKYCEENPEGPLRIRGTGRHRFKPFRYRHLGQFAPLGG 519
Query: 191 EQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFGRDSSCI 246
EQTAAQLPGDWI +GHSTQWLWYSVYA+KQ SWRTR LV+SDW RRFI+GRDSS +
Sbjct: 520 EQTAAQLPGDWIHVGHSTQWLWYSVYASKQFSWRTRMLVVSDWGRRFIYGRDSSSL 575
>Os06g0684000 Similar to External rotenone-insensitive NADPH dehydrogenase
Length = 588
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 174/238 (73%), Positives = 207/238 (86%), Gaps = 2/238 (0%)
Query: 11 QGKRRVLATDEWLRVRECDGVYAVGDCATINQRRVMDDISEIFRVADKDNSGTLTVKEIQ 70
Q RRVLAT+EWLRV ECD +YA+GDCA+I QR++MDDIS +F++ADKDNSGTLT+KEI
Sbjct: 351 QTNRRVLATNEWLRVHECDNIYAIGDCASITQRKIMDDISTVFKMADKDNSGTLTLKEIN 410
Query: 71 DVLDDIYVRYPQVELYLKSRQMNGIADLVRTAKGDAEKESVELNIEEFKKALSLVDSQVK 130
DVL+DI +RYPQVELY+KS M I DL++ A GD+ KES+ +NIEEFKKALS VDSQVK
Sbjct: 411 DVLEDICIRYPQVELYMKSMHMLDIRDLIKDAIGDSHKESMVVNIEEFKKALSHVDSQVK 470
Query: 131 NLPATAQVASQQGQYLARCFNKMKDAEENPEGPIRI--RGEGRHRFRPFRYRHLGQFAPL 188
++PATAQVA+QQG YLA CFNKM +E+PEGP+R+ G GRH FRPFRY+HLGQFAPL
Sbjct: 471 SIPATAQVAAQQGHYLAECFNKMDQCKEHPEGPLRMTGTGSGRHNFRPFRYKHLGQFAPL 530
Query: 189 GGEQTAAQLPGDWISIGHSTQWLWYSVYATKQISWRTRALVISDWSRRFIFGRDSSCI 246
GGEQ AA+LPGDW+S+GHSTQWLWYSVYA+KQ+SWRTR LV+SDW+RRFIFGRDSS I
Sbjct: 531 GGEQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRMLVVSDWTRRFIFGRDSSRI 588
>Os07g0564500 Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region
domain containing protein
Length = 562
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 132 LPATAQVASQQGQYLARCFNKMKDAEENPEGPIRIRGEGRHRF-RPFRYRHLGQFAPLGG 190
LPA AQVA ++G+YLAR +++ + G R G PF Y+H+G A +G
Sbjct: 445 LPALAQVAEREGRYLARVMSRIAAQDGGRAG----RAVGSAELGEPFVYKHIGSMASVGR 500
Query: 191 EQTAAQLPGD----WISIGHSTQWL-WYSVYATKQISWRTRALVISDWSRRFIFGRDSSC 245
+ L + +S+ WL W S Y T+ +SWR R V +W+ +FGRD++
Sbjct: 501 YKALVDLRENKDARGVSMAGFVSWLMWRSAYLTRVVSWRNRFYVAVNWATTLVFGRDNTR 560
Query: 246 I 246
I
Sbjct: 561 I 561
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,269,425
Number of extensions: 333703
Number of successful extensions: 955
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 952
Number of HSP's successfully gapped: 4
Length of query: 246
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 148
Effective length of database: 11,918,829
Effective search space: 1763986692
Effective search space used: 1763986692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)