BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0122400 Os08g0122400|AK071781
(129 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0122400 Conserved hypothetical protein 222 6e-59
Os02g0801000 107 2e-24
Os02g0800900 107 2e-24
Os02g0800700 107 2e-24
Os02g0800300 Conserved hypothetical protein 107 2e-24
Os02g0801600 103 4e-23
Os02g0801100 100 2e-22
Os02g0800400 100 2e-22
Os02g0798300 Conserved hypothetical protein 81 2e-16
Os02g0813900 74 4e-14
>Os08g0122400 Conserved hypothetical protein
Length = 129
Score = 222 bits (565), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 110/129 (85%), Positives = 110/129 (85%)
Query: 1 MAQNKTIXXXXXXXXXXXXXXXXXXXGPPDLLQGWCADACREEQQKDPIYNKHCPDFCVI 60
MAQNKTI GPPDLLQGWCADACREEQQKDPIYNKHCPDFCVI
Sbjct: 1 MAQNKTISVALLLSTLVVVVAAVAATGPPDLLQGWCADACREEQQKDPIYNKHCPDFCVI 60
Query: 61 STKQIFRAYKGATDPPVERFNALCDEGCSKEFKEDPAISKKCVDTCIVMSKEAKEYFAKG 120
STKQIFRAYKGATDPPVERFNALCDEGCSKEFKEDPAISKKCVDTCIVMSKEAKEYFAKG
Sbjct: 61 STKQIFRAYKGATDPPVERFNALCDEGCSKEFKEDPAISKKCVDTCIVMSKEAKEYFAKG 120
Query: 121 GTIGAPAGA 129
GTIGAPAGA
Sbjct: 121 GTIGAPAGA 129
>Os02g0801000
Length = 127
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D C+++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKGGTIGAPAGA 129
KEFKEDPA +KKCVD+CIV +KE + AKGG PA A
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA 127
>Os02g0800900
Length = 127
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D C+++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKGGTIGAPAGA 129
KEFKEDPA +KKCVD+CIV +KE + AKGG PA A
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA 127
>Os02g0800700
Length = 127
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D C+++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKGGTIGAPAGA 129
KEFKEDPA +KKCVD+CIV +KE + AKGG PA A
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA 127
>Os02g0800300 Conserved hypothetical protein
Length = 127
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 71/100 (71%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D C+++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKGGTIGAPAGA 129
KEFKEDPA +KKCVD+CIV +KE + AKGG PA A
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA 127
>Os02g0801600
Length = 127
Score = 103 bits (257), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D +++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDIYILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKGGTIGAPAGA 129
KEFKEDPA +KKCVD+CIV +KE + AKGG PA A
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKGGASSVPARA 127
>Os02g0801100
Length = 122
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 67/91 (73%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D C+++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKG 120
KEFKEDPA +KKCVD+CIV +KE + AKG
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
>Os02g0800400
Length = 122
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 67/91 (73%)
Query: 30 DLLQGWCADACREEQQKDPIYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCS 89
D+ + C++ C +E+++ I +KHC D C+++ +++F A + P +E+F+ALC+EGCS
Sbjct: 28 DIEEAVCSEHCNDEEKEGTIDHKHCVDICILTNRELFGALERGMKPSMEQFSALCNEGCS 87
Query: 90 KEFKEDPAISKKCVDTCIVMSKEAKEYFAKG 120
KEFKEDPA +KKCVD+CIV +KE + AKG
Sbjct: 88 KEFKEDPATNKKCVDSCIVDAKELNGHLAKG 118
>Os02g0798300 Conserved hypothetical protein
Length = 129
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 1 MAQNKTIXXXXXXXXXXXXXXXXXXXGPPDLLQGWCADACREEQQKDPIYNKHCPDFCVI 60
MAQNKTI + ++ C + C E+++K PI K C DFC I
Sbjct: 1 MAQNKTIAVALLLATLVAVMGKEPET-LEEAVRAGCKEECSEQKKKAPIDEKQCEDFCFI 59
Query: 61 STKQIFRAYKGATDPPVERFNALCDEGCSKEFKEDPAISKKCVDTCIVMSKEAKEYFAK 119
TK IF A+KG D +RF C+ C+ +KEDPA SKKC ++C +KEA+ + K
Sbjct: 60 KTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAESCEADAKEAEVFLDK 118
>Os02g0813900
Length = 81
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 36 CADACREEQQKDP-IYNKHCPDFCVISTKQIFRAYKGATDPPVERFNALCDEGCSKEFKE 94
C + +E ++DP NKHC D C+I KQ+ + +P +E+F+ +C+EG SKEFKE
Sbjct: 8 CNEGRSKEFKEDPATNNKHCVDICIILNKQLLGPLREKKNPTMEKFSVVCNEGRSKEFKE 67
Query: 95 DPAISKKCVDTCI 107
DPA +KKCVD+CI
Sbjct: 68 DPATNKKCVDSCI 80
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,291,796
Number of extensions: 152468
Number of successful extensions: 277
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 258
Number of HSP's successfully gapped: 10
Length of query: 129
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 40
Effective length of database: 12,388,755
Effective search space: 495550200
Effective search space used: 495550200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 150 (62.4 bits)