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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0800300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0402) R2 : 0.098
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.11 (0.726) R2dE : 0.098 R2E : 0.098
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 3.4e-05 (0.0847) R2dN8 : 8.45e-10 R2N8 : -4.39e-07
σ : 0.756
deviance : 263.27
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C
peak time of C : --
E
wheather : temperature
threshold : 19.69
memory length : 105
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.05
open length of G : 2.46

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
246.13 0.737 4.33 2.91 0.155 148 -0.547 308 -0.00938 19 20 10 9 3
267.06 0.767 2.89 -0.0937 0.151 3.48 -0.519 -- -0.000461 19.7 20 10 9 3
246.91 0.732 4.33 2.91 0.154 148 -- 308 -0.00874 18.9 20 10 9 3
261.86 0.754 2.89 -0.15 0.158 4.88 -- -- -0.0163 17.8 19.6 106 7.93 2.57
248.13 0.734 4.33 2.91 -- 148 -- 308 -0.0088 -- 20 10 9 3
288.61 0.796 2.9 -0.274 0.121 -- -0.397 -- -0.0493 16.8 -- -- -- --
288.97 0.796 2.9 -0.276 0.123 -- -- -- -0.0515 17.6 -- -- -- --
262.86 0.755 2.89 -0.129 -- 5.05 -- -- -0.0153 -- 19.68 93 8.08 2.58
262.03 0.754 2.89 -- 0.152 5.1 -- -- 0.00253 18.7 19.68 110 8.02 2.43
289.77 0.795 2.9 -0.28 -- -- -- -- -0.0545 -- -- -- -- --
290.98 0.798 2.89 -- 0.128 -- -- -- -0.0208 17.5 -- -- -- --
263.27 0.756 2.88 -- -- 5.11 -- -- 3.4e-05 -- 19.69 105 8.05 2.46
291.83 0.797 2.89 -- -- -- -- -- -0.0234 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.13 temperature 20.0 10 < th dose independent rect. 9 3
2 246.21 temperature 20.0 30 < th dose dependent rect. 9 3
5 246.32 temperature 15.0 720 < th dose dependent rect. 24 1
7 246.42 temperature 15.0 720 < th dose dependent rect. 11 14
8 246.51 temperature 15.0 720 < th dose independent rect. 23 2
116 252.42 temperature 20.0 90 < th dose dependent rect. 8 9
197 255.92 temperature 15.0 720 < th dose dependent sin 5 NA
213 256.56 temperature 15.0 720 < th dose independent sin 7 NA
223 256.82 temperature 15.0 720 < th dose dependent sin 16 NA
322 260.09 temperature 15.0 720 > th dose independent sin 8 NA
331 260.46 temperature 20.0 90 < th dose independent rect. 8 10
346 261.12 temperature 15.0 720 > th dose independent sin 6 NA
623 265.44 atmosphere 1010.0 10 > th dose dependent rect. 10 1
646 265.59 atmosphere 1015.0 4320 > th dose dependent rect. 14 6
667 265.67 atmosphere 1015.0 4320 > th dose independent rect. 18 1
670 265.67 atmosphere 1015.0 4320 > th dose dependent rect. 18 1
710 266.25 atmosphere 1015.0 4320 < th dose independent rect. 15 3
731 266.51 atmosphere 1015.0 4320 > th dose independent rect. 15 5
787 267.22 atmosphere 1015.0 4320 > th dose independent rect. 15 1
788 267.22 atmosphere 1015.0 4320 > th dose dependent rect. 15 1
798 267.43 temperature 15.0 720 < th dose dependent rect. 4 23
855 268.10 temperature 15.0 720 < th dose dependent no NA NA
856 268.10 temperature 20.0 270 < th dose dependent rect. 6 1
863 268.11 temperature 15.0 720 < th dose independent no NA NA
880 268.46 temperature 15.0 720 < th dose independent rect. 4 23
885 268.77 temperature 15.0 720 > th dose independent no NA NA
926 269.79 temperature 15.0 1440 > th dose independent rect. 14 13
939 270.63 wind 3.0 720 > th dose independent rect. 6 1
975 271.73 temperature 15.0 1440 > th dose independent rect. 23 4
983 271.99 radiation 20.0 1440 < th dose independent rect. 17 11
987 272.10 temperature 15.0 1440 > th dose independent rect. 23 7
998 272.16 humidity 90.0 90 > th dose independent rect. 10 1
1000 272.16 precipitation 0.1 90 > th dose independent rect. 10 1