BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0120500 Os08g0120500|AK102447
(716 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0120500 Similar to Topoisomerase-like protein 1347 0.0
Os04g0482800 Similar to Topoisomerase-like protein 768 0.0
Os03g0222100 Similar to Topoisomerase-like protein 571 e-163
>Os08g0120500 Similar to Topoisomerase-like protein
Length = 716
Score = 1347 bits (3487), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 666/716 (93%), Positives = 666/716 (93%)
Query: 1 MASPRNEGFLTQDQREKLRIAVQNAETLSLASPRSPTGGSTSALLQQYEQQXXXXXXXXX 60
MASPRNEGFLTQDQREKLRIAVQNAETLSLASPRSPTGGSTSALLQQYEQQ
Sbjct: 1 MASPRNEGFLTQDQREKLRIAVQNAETLSLASPRSPTGGSTSALLQQYEQQRAAAAAAAA 60
Query: 61 XXXXXXXXXXXVRHVRRSHSGKTIKVKKDGAGGKGTWGKLIDTDTDACLDRNDPNYDSDE 120
VRHVRRSHSGKTIKVKKDGAGGKGTWGKLIDTDTDACLDRNDPNYDSDE
Sbjct: 61 RGGGGGGGGGGVRHVRRSHSGKTIKVKKDGAGGKGTWGKLIDTDTDACLDRNDPNYDSDE 120
Query: 121 EPYELVEAPVSTPVEDYKKSVAPIIEEYFSTGDVKLAASDLKELGYDDFHRYFVKKLVSM 180
EPYELVEAPVSTPVEDYKKSVAPIIEEYFSTGDVKLAASDLKELGYDDFHRYFVKKLVSM
Sbjct: 121 EPYELVEAPVSTPVEDYKKSVAPIIEEYFSTGDVKLAASDLKELGYDDFHRYFVKKLVSM 180
Query: 181 AMDRHDKEKEMASVLLSSLYGDVISSTQIRLGFVMXXXXXXXXXXXXXXXXXXXXXFIAR 240
AMDRHDKEKEMASVLLSSLYGDVISSTQIRLGFVM FIAR
Sbjct: 181 AMDRHDKEKEMASVLLSSLYGDVISSTQIRLGFVMLLEAVDDLAVDILDAVDVLALFIAR 240
Query: 241 AVVDDILPPAFLSREKASLSESSKGMQVVQIAEKSYLSAPHHAELLERRWGGSTRTTVDA 300
AVVDDILPPAFLSREKASLSESSKGMQVVQIAEKSYLSAPHHAELLERRWGGSTRTTVDA
Sbjct: 241 AVVDDILPPAFLSREKASLSESSKGMQVVQIAEKSYLSAPHHAELLERRWGGSTRTTVDA 300
Query: 301 VKLRITDLLKEYIKNGDTAEACRCIRELAVPFFHHEVVKRALTLGMESPTAEALIVKLLK 360
VKLRITDLLKEYIKNGDTAEACRCIRELAVPFFHHEVVKRALTLGMESPTAEALIVKLLK
Sbjct: 301 VKLRITDLLKEYIKNGDTAEACRCIRELAVPFFHHEVVKRALTLGMESPTAEALIVKLLK 360
Query: 361 EASEELLISSSQMMKGFSRVVXXXXXXXXXIPSAKSQFQTLVSKAVSEGWLDSSFVHVGA 420
EASEELLISSSQMMKGFSRVV IPSAKSQFQTLVSKAVSEGWLDSSFVHVGA
Sbjct: 361 EASEELLISSSQMMKGFSRVVDSLDDLSLDIPSAKSQFQTLVSKAVSEGWLDSSFVHVGA 420
Query: 421 NGDVQDDEHEKLRRYKKEAVSMIHEYFLSDDVPEIIRSLKELGSPEYNPVFIKKLITIAM 480
NGDVQDDEHEKLRRYKKEAVSMIHEYFLSDDVPEIIRSLKELGSPEYNPVFIKKLITIAM
Sbjct: 421 NGDVQDDEHEKLRRYKKEAVSMIHEYFLSDDVPEIIRSLKELGSPEYNPVFIKKLITIAM 480
Query: 481 DRKNREKEMASILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 540
DRKNREKEMASILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV
Sbjct: 481 DRKNREKEMASILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASDELGLFLARAV 540
Query: 541 IDDVLAPLNLDEISGKLPPNCSGAETLNMARSLATARHAGERLLRCWGGGTGWVVEDTKD 600
IDDVLAPLNLDEISGKLPPNCSGAETLNMARSLATARHAGERLLRCWGGGTGWVVEDTKD
Sbjct: 541 IDDVLAPLNLDEISGKLPPNCSGAETLNMARSLATARHAGERLLRCWGGGTGWVVEDTKD 600
Query: 601 KIAKLLEEYESGGDVGEACNCIRELHMPFFNHEVVKKALVMAMEKKNDRILGLLQECFGE 660
KIAKLLEEYESGGDVGEACNCIRELHMPFFNHEVVKKALVMAMEKKNDRILGLLQECFGE
Sbjct: 601 KIAKLLEEYESGGDVGEACNCIRELHMPFFNHEVVKKALVMAMEKKNDRILGLLQECFGE 660
Query: 661 GIITINQMTKGFSRVRDGLDDLALDIPDAREKFLSYVEHAKKSGWLLPSFGVATSA 716
GIITINQMTKGFSRVRDGLDDLALDIPDAREKFLSYVEHAKKSGWLLPSFGVATSA
Sbjct: 661 GIITINQMTKGFSRVRDGLDDLALDIPDAREKFLSYVEHAKKSGWLLPSFGVATSA 716
>Os04g0482800 Similar to Topoisomerase-like protein
Length = 661
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/642 (61%), Positives = 488/642 (76%), Gaps = 17/642 (2%)
Query: 72 VRHVRRSHSGKTIKVKKDGAGGKGTWGKLIDTDTDACLDRNDPNYDSDEEPYELVEAPVS 131
VRH+ H+ K GAGGK L D D+ N +++ P L
Sbjct: 35 VRHLPHHHASKR------GAGGKNEQYNLEDVDSVPSKMSNKLVNGNNKVPATL------ 82
Query: 132 TPVEDYKKSVAPIIEEYFSTGDVKLAASDLKELGYDDFHRYFVKKLVSMAMDRHDKEKEM 191
+DYK+ + P+IEEYFSTGDV+LAAS+L+ LG D FH YF+KKL+SMAMDRHDKEKEM
Sbjct: 83 ---DDYKRLLVPVIEEYFSTGDVELAASELRSLGSDQFHSYFIKKLISMAMDRHDKEKEM 139
Query: 192 ASVLLSSLYGDVISSTQIRLGFVMXXXXXXXXXXXXXXXXXXXXXFIARAVVDDILPPAF 251
AS+LLS+LY D++ S+++ GF+M F+ARAVVD+ILPP F
Sbjct: 140 ASILLSALYADLLGSSKMSEGFMMLLESTEDLSVDIPDAIDVLSVFVARAVVDEILPPVF 199
Query: 252 LSREKASLSESSKGMQVVQIAEKSYLSAPHHAELLERRWGGSTRTTVDAVKLRITDLLKE 311
L+R +A L E SKG++V+Q++EKSYLSAPHHAEL+ER+WGGST TV+ K RI D+LKE
Sbjct: 200 LTRARALLPEFSKGIEVLQVSEKSYLSAPHHAELVERKWGGSTHFTVEEAKRRIQDILKE 259
Query: 312 YIKNGDTAEACRCIRELAVPFFHHEVVKRALTLGMESPTAEALIVKLLKEASEELLISSS 371
YI++GD EA RCIREL +PFFHHEVVKRALTL ME+ +++ LI+KLLKE++ LISS+
Sbjct: 260 YIESGDIDEAFRCIRELGLPFFHHEVVKRALTLSMENLSSQPLILKLLKESTAGCLISSN 319
Query: 372 QMMKGFSRVVXXXXXXXXXIPSAKSQFQTLVSKAVSEGWLDSSFVHVGA-NGDVQDDEHE 430
QM KGF R+ IPSAK F LV A SEGWLD+SF A N D+++ E
Sbjct: 320 QMSKGFCRLAESIDDLSLDIPSAKILFDKLVLTATSEGWLDASFTTSSAPNEDMRNASGE 379
Query: 431 KLRRYKKEAVSMIHEYFLSDDVPEIIRSLKELGSPEYNPVFIKKLITIAMDRKNREKEMA 490
K++ +K+E+ +I EYFLSDDVPE+I SL+EL +PEYNP+F+KKLIT+AMDRKNREKEMA
Sbjct: 380 KIKHFKEESGHIIQEYFLSDDVPELIISLQELSAPEYNPIFLKKLITLAMDRKNREKEMA 439
Query: 491 SILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLAPLNL 550
S LLSSLS+ELFST+DI+KGFI+LL+SAEDTALDI+DA EL LFLARAVID+VL PLNL
Sbjct: 440 SALLSSLSLELFSTDDIMKGFILLLQSAEDTALDIVDAPSELALFLARAVIDEVLIPLNL 499
Query: 551 DEISGKLPPNCSGAETLNMARSLATARHAGERLLRCWGGGTGWVVEDTKDKIAKLLEEYE 610
DEI +L PN SG++T+ MAR+L ARH+GER+LRCWGGGTGW VED KDKIAKLLEEY
Sbjct: 500 DEIGNRLRPNSSGSQTVQMARALLAARHSGERILRCWGGGTGWAVEDAKDKIAKLLEEYN 559
Query: 611 SGGDVGEACNCIRELHMPFFNHEVVKKALVMAMEKKND-RILGLLQECFGEGIITINQMT 669
+GGD+GEAC CIR+L MPFFNHEVVKKALVMAMEK+N+ RIL LLQECFGEG+ITINQMT
Sbjct: 560 TGGDLGEACQCIRDLGMPFFNHEVVKKALVMAMEKENEARILALLQECFGEGLITINQMT 619
Query: 670 KGFSRVRDGLDDLALDIPDAREKFLSYVEHAKKSGWLLPSFG 711
GF+RV++GLDDL LDIP+A+EKF +YV+ A + GWLLP F
Sbjct: 620 LGFTRVKEGLDDLILDIPNAQEKFGAYVDLATERGWLLPPFA 661
Score = 239 bits (610), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 131/287 (45%), Positives = 186/287 (64%), Gaps = 3/287 (1%)
Query: 432 LRRYKKEAVSMIHEYFLSDDVPEIIRSLKELGSPEYNPVFIKKLITIAMDRKNREKEMAS 491
L YK+ V +I EYF + DV L+ LGS +++ FIKKLI++AMDR ++EKEMAS
Sbjct: 82 LDDYKRLLVPVIEEYFSTGDVELAASELRSLGSDQFHSYFIKKLISMAMDRHDKEKEMAS 141
Query: 492 ILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLAPLNLD 551
ILLS+L +L + + +GF+MLLES ED ++DI DA D L +F+ARAV+D++L P+ L
Sbjct: 142 ILLSALYADLLGSSKMSEGFMMLLESTEDLSVDIPDAIDVLSVFVARAVVDEILPPVFLT 201
Query: 552 EISGKLPPNCSGAETLNMA-RSLATARHAGERLLRCWGGGTGWVVEDTKDKIAKLLEEYE 610
LP G E L ++ +S +A H E + R WGG T + VE+ K +I +L+EY
Sbjct: 202 RARALLPEFSKGIEVLQVSEKSYLSAPHHAELVERKWGGSTHFTVEEAKRRIQDILKEYI 261
Query: 611 SGGDVGEACNCIRELHMPFFNHEVVKKALVMAMEKKNDR--ILGLLQECFGEGIITINQM 668
GD+ EA CIREL +PFF+HEVVK+AL ++ME + + IL LL+E +I+ NQM
Sbjct: 262 ESGDIDEAFRCIRELGLPFFHHEVVKRALTLSMENLSSQPLILKLLKESTAGCLISSNQM 321
Query: 669 TKGFSRVRDGLDDLALDIPDAREKFLSYVEHAKKSGWLLPSFGVATS 715
+KGF R+ + +DDL+LDIP A+ F V A GWL SF +++
Sbjct: 322 SKGFCRLAESIDDLSLDIPSAKILFDKLVLTATSEGWLDASFTTSSA 368
>Os03g0222100 Similar to Topoisomerase-like protein
Length = 638
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 306/611 (50%), Positives = 407/611 (66%), Gaps = 26/611 (4%)
Query: 121 EPYELVEAPVSTPVE--DYKKSVAPIIEEYFSTGDVKLAASDLKELGYDDFHRYFVKKLV 178
E L+ +P + E +K+ I+EEYFST DV A++L+EL +H YFVKKLV
Sbjct: 27 EDASLLRSPTVSSEEFMQFKRKATTILEEYFSTDDVAATANELRELRVPCYHYYFVKKLV 86
Query: 179 SMAMDRHDKEKEMASVLLSSLYGDVISSTQIRLGFVMXXXXXXXXXXXXXXXXXXXXXFI 238
S+AMDRHD+EKEMA+VLLSSLYGDVI Q+ GF F+
Sbjct: 87 SVAMDRHDREKEMAAVLLSSLYGDVIDRPQVYKGFGKLAESCDDLSVDTPDAVDILAVFV 146
Query: 239 ARAVVDDILPPAFLSREKASLSESSKGMQVVQIAEKSYLSAPHHAELLERRWGGSTRTTV 298
ARA++DDILPPAFL+++ L E KG +V+ AEKSYLS PHH E++ +RWGGS TV
Sbjct: 147 ARAIIDDILPPAFLAKQLTCLPEGCKGAEVLHRAEKSYLSVPHHGEIILQRWGGSKSITV 206
Query: 299 DAVKLRITDLLKEYIKNGDTAEACRCIRELAVPFFHHEVVKRALTLGME-SPTAEALIVK 357
+ K +I D+L+EY+ GD EACRCIR L + FFHH++VKRALTL ME AE I+
Sbjct: 207 EEAKAKIADILEEYLAAGDIGEACRCIRGLKISFFHHDIVKRALTLAMERGGGAEGHILD 266
Query: 358 LLKEASEELLISSSQMMKGFSRVVXXXXXXXXXIPSAKSQFQTLVSKAVSEGWL-DSSFV 416
LLK AS+E +I+ SQ+ KGF+R++ +P+A+ ++++ KA SEGWL SS
Sbjct: 267 LLKSASDEGIINESQITKGFNRLIDSVDDLTLDVPNARRLLKSMILKASSEGWLCASSLK 326
Query: 417 HVGA---NGDVQDDEHEKLRRYKKEAVSMIHEYFLSDDVPEIIRSLKE---LGSPEYNPV 470
+G V+DD +R++K + +S+I EYFL+ D+ E++ SL+ S YN +
Sbjct: 327 PLGPEPKKAVVEDD--AAVRQFKAKTLSIIKEYFLTGDIIEVMSSLEAENYACSSSYNAI 384
Query: 471 FIKKLITIAMDRKNREKEMASILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASD 530
F+KKLIT AMDRK+REKEMAS+LLSSL M ED+V GF +L+ESAED ALD +
Sbjct: 385 FVKKLITSAMDRKSREKEMASVLLSSLGM---PPEDVVSGFHLLIESAEDAALDNPAIVE 441
Query: 531 ELGLFLARAVIDDVLAPLNLDEIS-----GKLPPNCSGAETLNMARSLATARHAGERLLR 585
+L +F AR+V+D+V+AP NL+++ GK + +G L AR+L A+ + ER+LR
Sbjct: 442 DLTMFFARSVVDEVIAPSNLEKMEEEAGRGKPGGSSTGLLALRNARALLGAKLSAERILR 501
Query: 586 CWGGG----TGWVVEDTKDKIAKLLEEYESGGDVGEACNCIRELHMPFFNHEVVKKALVM 641
CWGGG GW ++D KDKI +LL+EY+ GGD+ EAC CI+EL MPFF+HEVVKKALV
Sbjct: 502 CWGGGATGKAGWELDDVKDKIGRLLQEYDCGGDIREACQCIKELGMPFFHHEVVKKALVA 561
Query: 642 AMEK--KNDRILGLLQECFGEGIITINQMTKGFSRVRDGLDDLALDIPDAREKFLSYVEH 699
MEK K++R+ GLL EC+G G+IT NQMTKGF RV +DDLALD+PDA ++ YVE
Sbjct: 562 IMEKRGKDERLWGLLAECYGRGLITPNQMTKGFERVAGCVDDLALDVPDAGKQLCCYVER 621
Query: 700 AKKSGWLLPSF 710
AKK GWL SF
Sbjct: 622 AKKGGWLDASF 632
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,961,300
Number of extensions: 888972
Number of successful extensions: 2557
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 4
Length of query: 716
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 608
Effective length of database: 11,396,689
Effective search space: 6929186912
Effective search space used: 6929186912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)