Os03g0222100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Topoisomerase-like protein.
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Os03g0222100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Topoisomerase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 108.95 | 0.49 | 3.05 | -0.06 | 0.261 | -0.769 | -0.41 | 3.57 | -0.0338 | 8.35 | 7 | 830 | -- | -- |
| 110.97 | 0.491 | 3.08 | -0.0214 | 0.196 | -1.37 | -0.104 | -- | -0.0331 | 9.16 | 8.1 | 1104 | -- | -- |
| 109.26 | 0.487 | 3.05 | -0.08 | 0.224 | -0.678 | -- | 3.56 | -0.025 | 8.4 | 7.307 | 966 | -- | -- |
| 110.67 | 0.49 | 3.08 | 0.000983 | 0.194 | -1.41 | -- | -- | -0.0231 | 8.32 | 7.408 | 966 | -- | -- |
| 111.72 | 0.492 | 3.06 | -0.0928 | -- | -0.599 | -- | 3.63 | -0.0291 | -- | 7.602 | 1016 | -- | -- |
| 125.3 | 0.525 | 3.11 | -0.26 | 0.169 | -- | -0.0661 | -- | -0.135 | 7.23 | -- | -- | -- | -- |
| 125.31 | 0.524 | 3.11 | -0.261 | 0.168 | -- | -- | -- | -0.134 | 7.41 | -- | -- | -- | -- |
| 112.82 | 0.495 | 3.09 | -0.0275 | -- | -1.38 | -- | -- | -0.0331 | -- | 8.1 | 1106 | -- | -- |
| 110.52 | 0.49 | 3.09 | -- | 0.228 | -1.49 | -- | -- | -0.037 | 8.63 | 7.486 | 973 | -- | -- |
| 126.82 | 0.526 | 3.11 | -0.258 | -- | -- | -- | -- | -0.132 | -- | -- | -- | -- | -- |
| 127.1 | 0.527 | 3.1 | -- | 0.166 | -- | -- | -- | -0.105 | 7.52 | -- | -- | -- | -- |
| 112.85 | 0.495 | 3.09 | -- | -- | -1.4 | -- | -- | -0.0307 | -- | 8.088 | 1106 | -- | -- |
| 128.58 | 0.529 | 3.11 | -- | -- | -- | -- | -- | -0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.09 | wind | 7 | 720 | < th | dose independent | rect. | 17 | 8 |
| 2 | 106.11 | wind | 3 | 270 | > th | dose dependent | sin | 10 | NA |
| 5 | 106.58 | wind | 5 | 720 | > th | dose dependent | rect. | 17 | 7 |
| 8 | 106.64 | wind | 3 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 10 | 106.98 | wind | 5 | 720 | > th | dose independent | rect. | 17 | 7 |
| 26 | 107.52 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 18 |
| 28 | 107.58 | wind | 5 | 270 | > th | dose independent | rect. | 19 | 13 |
| 34 | 107.65 | wind | 5 | 720 | > th | dose independent | rect. | 21 | 1 |
| 46 | 107.81 | wind | 5 | 720 | > th | dose dependent | sin | 14 | NA |
| 53 | 107.89 | wind | 7 | 720 | > th | dose independent | sin | 14 | NA |
| 54 | 107.90 | wind | 5 | 270 | < th | dose independent | sin | 11 | NA |
| 57 | 107.92 | wind | 7 | 720 | < th | dose independent | sin | 14 | NA |
| 66 | 107.95 | wind | 5 | 270 | > th | dose independent | sin | 11 | NA |
| 76 | 108.03 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 16 |
| 136 | 108.39 | wind | 9 | 270 | < th | dose dependent | sin | 11 | NA |
| 258 | 109.02 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 15 |
| 260 | 109.03 | wind | 5 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 275 | 109.14 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 22 |
| 347 | 109.46 | wind | 7 | 720 | < th | dose independent | rect. | 2 | 23 |
| 353 | 109.48 | wind | 7 | 720 | < th | dose independent | rect. | 9 | 16 |
| 402 | 109.68 | wind | 5 | 720 | < th | dose independent | rect. | 13 | 12 |
| 407 | 109.71 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 10 |
| 433 | 109.82 | wind | 3 | 90 | > th | dose independent | sin | 8 | NA |
| 460 | 109.90 | wind | 5 | 720 | > th | dose dependent | rect. | 11 | 19 |
| 476 | 109.96 | wind | 7 | 720 | > th | dose independent | rect. | 11 | 18 |
| 487 | 109.98 | wind | 7 | 720 | < th | dose independent | rect. | 16 | 23 |
| 538 | 110.11 | wind | 9 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 560 | 110.19 | wind | 3 | 90 | < th | dose independent | sin | 8 | NA |
| 618 | 110.31 | wind | 7 | 720 | < th | dose independent | no | NA | NA |
| 646 | 110.36 | wind | 7 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 661 | 110.39 | wind | 7 | 720 | > th | dose independent | rect. | 11 | 13 |
| 674 | 110.42 | wind | 7 | 720 | > th | dose independent | rect. | 1 | 23 |
| 694 | 110.46 | wind | 7 | 720 | < th | dose independent | rect. | 8 | 23 |
| 703 | 110.48 | wind | 7 | 720 | > th | dose independent | no | NA | NA |
| 795 | 110.61 | wind | 9 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 849 | 110.72 | wind | 9 | 720 | < th | dose dependent | sin | 15 | NA |
| 920 | 110.82 | wind | 5 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 964 | 110.89 | wind | 7 | 720 | < th | dose independent | rect. | 19 | 23 |
| 965 | 110.89 | wind | 5 | 720 | > th | dose dependent | no | NA | NA |
| 995 | 110.93 | wind | 7 | 720 | < th | dose independent | rect. | 6 | 23 |