BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0222100 Os03g0222100|AK070688
(638 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0222100 Similar to Topoisomerase-like protein 1265 0.0
Os08g0120500 Similar to Topoisomerase-like protein 610 e-175
Os04g0482800 Similar to Topoisomerase-like protein 565 e-161
>Os03g0222100 Similar to Topoisomerase-like protein
Length = 638
Score = 1265 bits (3273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/638 (97%), Positives = 622/638 (97%)
Query: 1 MSPMESRPDDLVPPAMHKPAIQCAAAEDASLLRSPTVSSEEFMQFKRKATTILEEYFSTD 60
MSPMESRPDDLVPPAMHKPAIQCAAAEDASLLRSPTVSSEEFMQFKRKATTILEEYFSTD
Sbjct: 1 MSPMESRPDDLVPPAMHKPAIQCAAAEDASLLRSPTVSSEEFMQFKRKATTILEEYFSTD 60
Query: 61 DVAATANELRELRVPCYHYYFVKKLVSVAMDRHDREKEMAAVLLSSLYGDVIDRPQVYKG 120
DVAATANELRELRVPCYHYYFVKKLVSVAMDRHDREKEMAAVLLSSLYGDVIDRPQVYKG
Sbjct: 61 DVAATANELRELRVPCYHYYFVKKLVSVAMDRHDREKEMAAVLLSSLYGDVIDRPQVYKG 120
Query: 121 FGKLAESCDDLSVDTPDAVDILAVFVARAIIDDILPPAFLAKQLTCLPEGCKGAEVLHRA 180
FGKLAESCDDLSVDTPDAVDILAVFVARAIIDDILPPAFLAKQLTCLPEGCKGAEVLHRA
Sbjct: 121 FGKLAESCDDLSVDTPDAVDILAVFVARAIIDDILPPAFLAKQLTCLPEGCKGAEVLHRA 180
Query: 181 EKSYLSVPHHGEIILQRWGGSKSITVEEAKAKIADILEEYLAAGDIGEACRCIRGLKISF 240
EKSYLSVPHHGEIILQRWGGSKSITVEEAKAKIADILEEYLAAGDIGEACRCIRGLKISF
Sbjct: 181 EKSYLSVPHHGEIILQRWGGSKSITVEEAKAKIADILEEYLAAGDIGEACRCIRGLKISF 240
Query: 241 FHHDIVKRALTLAMERGGGAEGHILDLLKSASDEGIINESQITKGFNRLIDSVDDLTLDV 300
FHHDIVKRALTLAMERGGGAEGHILDLLKSASDEGIINESQITKGFNRLIDSVDDLTLDV
Sbjct: 241 FHHDIVKRALTLAMERGGGAEGHILDLLKSASDEGIINESQITKGFNRLIDSVDDLTLDV 300
Query: 301 PNARRLLKSMILKASSEGWLCASSLKPLGPEPKKAVVEDDAAVRQFKAKTLSIIKEYFLT 360
PNARRLLKSMILKASSEGWLCASSLKPLGPEPKKAVVEDDAAVRQFKAKTLSIIKEYFLT
Sbjct: 301 PNARRLLKSMILKASSEGWLCASSLKPLGPEPKKAVVEDDAAVRQFKAKTLSIIKEYFLT 360
Query: 361 GDIIEVMSSLEAENYACSSSYNAIFVKKLITSAMDRKSREKEMASVLLSSLGMPPEDVVS 420
GDIIEVMSSLEAENYACSSSYNAIFVKKLITSAMDRKSREKEMASVLLSSLGMPPEDVVS
Sbjct: 361 GDIIEVMSSLEAENYACSSSYNAIFVKKLITSAMDRKSREKEMASVLLSSLGMPPEDVVS 420
Query: 421 GFHLLIESAEDAALDNPAIVEDLTMFFARSVVDEVIAPSNLEKMEEEAGRGKPGGSSTXX 480
GFHLLIESAEDAALDNPAIVEDLTMFFARSVVDEVIAPSNLEKMEEEAGRGKPGGSST
Sbjct: 421 GFHLLIESAEDAALDNPAIVEDLTMFFARSVVDEVIAPSNLEKMEEEAGRGKPGGSSTGL 480
Query: 481 XXXXXXXXXXXXXXSAERILRCWGGGATGKAGWELDDVKDKIGRLLQEYDCGGDIREACQ 540
SAERILRCWGGGATGKAGWELDDVKDKIGRLLQEYDCGGDIREACQ
Sbjct: 481 LALRNARALLGAKLSAERILRCWGGGATGKAGWELDDVKDKIGRLLQEYDCGGDIREACQ 540
Query: 541 CIKELGMPFFHHEVVKKALVAIMEKRGKDERLWGLLAECYGRGLITPNQMTKGFERVAGC 600
CIKELGMPFFHHEVVKKALVAIMEKRGKDERLWGLLAECYGRGLITPNQMTKGFERVAGC
Sbjct: 541 CIKELGMPFFHHEVVKKALVAIMEKRGKDERLWGLLAECYGRGLITPNQMTKGFERVAGC 600
Query: 601 VDDLALDVPDAGKQLCCYVERAKKGGWLDASFPNGVRS 638
VDDLALDVPDAGKQLCCYVERAKKGGWLDASFPNGVRS
Sbjct: 601 VDDLALDVPDAGKQLCCYVERAKKGGWLDASFPNGVRS 638
>Os08g0120500 Similar to Topoisomerase-like protein
Length = 716
Score = 610 bits (1574), Expect = e-175, Method: Compositional matrix adjust.
Identities = 317/593 (53%), Positives = 419/593 (70%), Gaps = 24/593 (4%)
Query: 45 FKRKATTILEEYFSTDDVAATANELRELRVPCYHYYFVKKLVSVAMDRHDREKEMAAVLL 104
+K+ I+EEYFST DV A++L+EL +H YFVKKLVS+AMDRHD+EKEMA+VLL
Sbjct: 137 YKKSVAPIIEEYFSTGDVKLAASDLKELGYDDFHRYFVKKLVSMAMDRHDKEKEMASVLL 196
Query: 105 SSLYGDVIDRPQVYKGFGKLAESCDDLSVDTPDAVDILAVFVARAIIDDILPPAFLAKQL 164
SSLYGDVI Q+ GF L E+ DDL+VD DAVD+LA+F+ARA++DDILPPAFL+++
Sbjct: 197 SSLYGDVISSTQIRLGFVMLLEAVDDLAVDILDAVDVLALFIARAVVDDILPPAFLSREK 256
Query: 165 TCLPEGCKGAEVLHRAEKSYLSVPHHGEIILQRWGGSKSITVEEAKAKIADILEEYLAAG 224
L E KG +V+ AEKSYLS PHH E++ +RWGGS TV+ K +I D+L+EY+ G
Sbjct: 257 ASLSESSKGMQVVQIAEKSYLSAPHHAELLERRWGGSTRTTVDAVKLRITDLLKEYIKNG 316
Query: 225 DIGEACRCIRGLKISFFHHDIVKRALTLAMERGGGAEGHILDLLKSASDEGIINESQITK 284
D EACRCIR L + FFHH++VKRALTL ME AE I+ LLK AS+E +I+ SQ+ K
Sbjct: 317 DTAEACRCIRELAVPFFHHEVVKRALTLGME-SPTAEALIVKLLKEASEELLISSSQMMK 375
Query: 285 GFNRLIDSVDDLTLDVPNARRLLKSMILKASSEGWLCASSLKPLGPEPKKAVVEDD--AA 342
GF+R++DS+DDL+LD+P+A+ ++++ KA SEGWL SS +G V+DD
Sbjct: 376 GFSRVVDSLDDLSLDIPSAKSQFQTLVSKAVSEGWL-DSSFVHVGA---NGDVQDDEHEK 431
Query: 343 VRQFKAKTLSIIKEYFLTGDIIEVMSSLEAENYACSSSYNAIFVKKLITSAMDRKSREKE 402
+R++K + +S+I EYFL+ D+ E++ SL+ S YN +F+KKLIT AMDRK+REKE
Sbjct: 432 LRRYKKEAVSMIHEYFLSDDVPEIIRSLKE---LGSPEYNPVFIKKLITIAMDRKNREKE 488
Query: 403 MASVLLSSLGM---PPEDVVSGFHLLIESAEDAALDNPAIVEDLTMFFARSVVDEVIAPS 459
MAS+LLSSL M ED+V GF +L+ESAED ALD ++L +F AR+V+D+V+AP
Sbjct: 489 MASILLSSLSMELFSTEDIVKGFIMLLESAEDTALDILDASDELGLFLARAVIDDVLAPL 548
Query: 460 NLEKMEEEAGRGKPGGSSTXXXXXXXXXXXXXXXXSAERILRCWGGGATGKAGWELDDVK 519
NL+++ +G+ P S + ER+LRCWGGG GW ++D K
Sbjct: 549 NLDEI---SGKLPPNCSGA--ETLNMARSLATARHAGERLLRCWGGG----TGWVVEDTK 599
Query: 520 DKIGRLLQEYDCGGDIREACQCIKELGMPFFHHEVVKKALVAIMEKRGKDERLWGLLAEC 579
DKI +LL+EY+ GGD+ EAC CI+EL MPFF+HEVVKKALV MEK K++R+ GLL EC
Sbjct: 600 DKIAKLLEEYESGGDVGEACNCIRELHMPFFNHEVVKKALVMAMEK--KNDRILGLLQEC 657
Query: 580 YGRGLITPNQMTKGFERVAGCVDDLALDVPDAGKQLCCYVERAKKGGWLDASF 632
+G G+IT NQMTKGF RV +DDLALD+PDA ++ YVE AKK GWL SF
Sbjct: 658 FGEGIITINQMTKGFSRVRDGLDDLALDIPDAREKFLSYVEHAKKSGWLLPSF 710
>Os04g0482800 Similar to Topoisomerase-like protein
Length = 661
Score = 565 bits (1457), Expect = e-161, Method: Compositional matrix adjust.
Identities = 296/591 (50%), Positives = 400/591 (67%), Gaps = 18/591 (3%)
Query: 45 FKRKATTILEEYFSTDDVAATANELRELRVPCYHYYFVKKLVSVAMDRHDREKEMAAVLL 104
+KR ++EEYFST DV A+ELR L +H YF+KKL+S+AMDRHD+EKEMA++LL
Sbjct: 85 YKRLLVPVIEEYFSTGDVELAASELRSLGSDQFHSYFIKKLISMAMDRHDKEKEMASILL 144
Query: 105 SSLYGDVIDRPQVYKGFGKLAESCDDLSVDTPDAVDILAVFVARAIIDDILPPAFLAKQL 164
S+LY D++ ++ +GF L ES +DLSVD PDA+D+L+VFVARA++D+ILPP FL +
Sbjct: 145 SALYADLLGSSKMSEGFMMLLESTEDLSVDIPDAIDVLSVFVARAVVDEILPPVFLTRAR 204
Query: 165 TCLPEGCKGAEVLHRAEKSYLSVPHHGEIILQRWGGSKSITVEEAKAKIADILEEYLAAG 224
LPE KG EVL +EKSYLS PHH E++ ++WGGS TVEEAK +I DIL+EY+ +G
Sbjct: 205 ALLPEFSKGIEVLQVSEKSYLSAPHHAELVERKWGGSTHFTVEEAKRRIQDILKEYIESG 264
Query: 225 DIGEACRCIRGLKISFFHHDIVKRALTLAMERGGGAEGHILDLLKSASDEGIINESQITK 284
DI EA RCIR L + FFHH++VKRALTL+ME ++ IL LLK ++ +I+ +Q++K
Sbjct: 265 DIDEAFRCIRELGLPFFHHEVVKRALTLSME-NLSSQPLILKLLKESTAGCLISSNQMSK 323
Query: 285 GFNRLIDSVDDLTLDVPNARRLLKSMILKASSEGWLCASSLKPLGPEPKKAVVEDDAAVR 344
GF RL +S+DDL+LD+P+A+ L ++L A+SEGWL AS P + ++
Sbjct: 324 GFCRLAESIDDLSLDIPSAKILFDKLVLTATSEGWLDASFTTSSAPNEDMRNASGE-KIK 382
Query: 345 QFKAKTLSIIKEYFLTGDIIEVMSSLEAENYACSSSYNAIFVKKLITSAMDRKSREKEMA 404
FK ++ II+EYFL+ D+ E++ SL+ + YN IF+KKLIT AMDRK+REKEMA
Sbjct: 383 HFKEESGHIIQEYFLSDDVPELIISLQE---LSAPEYNPIFLKKLITLAMDRKNREKEMA 439
Query: 405 ---SVLLSSLGMPPEDVVSGFHLLIESAEDAALDNPAIVEDLTMFFARSVVDEVIAPSNL 461
LS +D++ GF LL++SAED ALD +L +F AR+V+DEV+ P NL
Sbjct: 440 SALLSSLSLELFSTDDIMKGFILLLQSAEDTALDIVDAPSELALFLARAVIDEVLIPLNL 499
Query: 462 EKMEEEAGRGKPGGSSTXXXXXXXXXXXXXXXXSAERILRCWGGGATGKAGWELDDVKDK 521
+++ R +P S + S ERILRCWGGG GW ++D KDK
Sbjct: 500 DEI---GNRLRPNSSGS--QTVQMARALLAARHSGERILRCWGGG----TGWAVEDAKDK 550
Query: 522 IGRLLQEYDCGGDIREACQCIKELGMPFFHHEVVKKALVAIMEKRGKDERLWGLLAECYG 581
I +LL+EY+ GGD+ EACQCI++LGMPFF+HEVVKKALV MEK + R+ LL EC+G
Sbjct: 551 IAKLLEEYNTGGDLGEACQCIRDLGMPFFNHEVVKKALVMAMEKE-NEARILALLQECFG 609
Query: 582 RGLITPNQMTKGFERVAGCVDDLALDVPDAGKQLCCYVERAKKGGWLDASF 632
GLIT NQMT GF RV +DDL LD+P+A ++ YV+ A + GWL F
Sbjct: 610 EGLITINQMTLGFTRVKEGLDDLILDIPNAQEKFGAYVDLATERGWLLPPF 660
Score = 214 bits (546), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 123/285 (43%), Positives = 180/285 (63%), Gaps = 3/285 (1%)
Query: 36 TVSSEEFMQFKRKATTILEEYFSTDDVAATANELRELRVPCYHYYFVKKLVSVAMDRHDR 95
S E+ FK ++ I++EYF +DDV L+EL P Y+ F+KKL+++AMDR +R
Sbjct: 375 NASGEKIKHFKEESGHIIQEYFLSDDVPELIISLQELSAPEYNPIFLKKLITLAMDRKNR 434
Query: 96 EKEMAAVLLSSLYGDVIDRPQVYKGFGKLAESCDDLSVDTPDAVDILAVFVARAIIDDIL 155
EKEMA+ LLSSL ++ + KGF L +S +D ++D DA LA+F+ARA+ID++L
Sbjct: 435 EKEMASALLSSLSLELFSTDDIMKGFILLLQSAEDTALDIVDAPSELALFLARAVIDEVL 494
Query: 156 PPAFLAKQLTCLPEGCKGAEVLHRAEKSYLSVPHHGEIILQRWGGSKSITVEEAKAKIAD 215
P L + L G++ + A ++ L+ H GE IL+ WGG VE+AK KIA
Sbjct: 495 IPLNLDEIGNRLRPNSSGSQTVQMA-RALLAARHSGERILRCWGGGTGWAVEDAKDKIAK 553
Query: 216 ILEEYLAAGDIGEACRCIRGLKISFFHHDIVKRALTLAMERGGGAEGHILDLLKSASDEG 275
+LEEY GD+GEAC+CIR L + FF+H++VK+AL +AME+ E IL LL+ EG
Sbjct: 554 LLEEYNTGGDLGEACQCIRDLGMPFFNHEVVKKALVMAMEKEN--EARILALLQECFGEG 611
Query: 276 IINESQITKGFNRLIDSVDDLTLDVPNARRLLKSMILKASSEGWL 320
+I +Q+T GF R+ + +DDL LD+PNA+ + + A+ GWL
Sbjct: 612 LITINQMTLGFTRVKEGLDDLILDIPNAQEKFGAYVDLATERGWL 656
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 164/295 (55%), Gaps = 14/295 (4%)
Query: 341 AAVRQFKAKTLSIIKEYFLTGDIIEVMSSLEAENYACSSSYNAIFVKKLITSAMDRKSRE 400
A + +K + +I+EYF TGD+ S L + S +++ F+KKLI+ AMDR +E
Sbjct: 80 ATLDDYKRLLVPVIEEYFSTGDVELAASELRS---LGSDQFHSYFIKKLISMAMDRHDKE 136
Query: 401 KEMASVLLSSLG---MPPEDVVSGFHLLIESAEDAALDNPAIVEDLTMFFARSVVDEVIA 457
KEMAS+LLS+L + + GF +L+ES ED ++D P ++ L++F AR+VVDE++
Sbjct: 137 KEMASILLSALYADLLGSSKMSEGFMMLLESTEDLSVDIPDAIDVLSVFVARAVVDEILP 196
Query: 458 PSNLEKMEEEAGRGKPGGSSTXXXXXXXXXXXXXXXXSAERILRCWGGGATGKAGWELDD 517
P L + A P S AE + R WGG + +++
Sbjct: 197 PVFLTR----ARALLPEFSKGIEVLQVSEKSYLSAPHHAELVERKWGGSTH----FTVEE 248
Query: 518 VKDKIGRLLQEYDCGGDIREACQCIKELGMPFFHHEVVKKALVAIMEKRGKDERLWGLLA 577
K +I +L+EY GDI EA +CI+ELG+PFFHHEVVK+AL ME + LL
Sbjct: 249 AKRRIQDILKEYIESGDIDEAFRCIRELGLPFFHHEVVKRALTLSMENLSSQPLILKLLK 308
Query: 578 ECYGRGLITPNQMTKGFERVAGCVDDLALDVPDAGKQLCCYVERAKKGGWLDASF 632
E LI+ NQM+KGF R+A +DDL+LD+P A V A GWLDASF
Sbjct: 309 ESTAGCLISSNQMSKGFCRLAESIDDLSLDIPSAKILFDKLVLTATSEGWLDASF 363
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,858,356
Number of extensions: 908518
Number of successful extensions: 2267
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2204
Number of HSP's successfully gapped: 5
Length of query: 638
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 531
Effective length of database: 11,448,903
Effective search space: 6079367493
Effective search space used: 6079367493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)