Os08g0120500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Topoisomerase-like protein.
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Os08g0120500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Topoisomerase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.25 | 0.399 | 9.95 | 1.84 | 1.48 | -0.893 | -0.956 | 1.52 | 0.332 | 20.7 | 79.33 | 1468 | -- | -- |
| 74.95 | 0.403 | 9.97 | 1.71 | 1.51 | -0.827 | -0.936 | -- | 0.331 | 20.9 | 83.64 | 1342 | -- | -- |
| 75.15 | 0.404 | 9.95 | 1.88 | 1.49 | -0.884 | -- | 1.57 | 0.338 | 20.6 | 80.4 | 1515 | -- | -- |
| 78.17 | 0.412 | 9.97 | 1.73 | 1.51 | -0.831 | -- | -- | 0.334 | 20.9 | 83.63 | 1348 | -- | -- |
| 199.47 | 0.658 | 9.91 | 1.87 | -- | -0.939 | -- | 1.63 | 0.338 | -- | 84 | 1471 | -- | -- |
| 90.99 | 0.447 | 9.97 | 1.57 | 1.49 | -- | -1.03 | -- | 0.352 | 20.7 | -- | -- | -- | -- |
| 94.41 | 0.455 | 9.97 | 1.61 | 1.5 | -- | -- | -- | 0.353 | 20.6 | -- | -- | -- | -- |
| 203.49 | 0.664 | 9.93 | 1.71 | -- | -0.823 | -- | -- | 0.321 | -- | 85.54 | 1464 | -- | -- |
| 152.06 | 0.574 | 9.99 | -- | 1.5 | -0.576 | -- | -- | 0.219 | 20.5 | 94 | 1527 | -- | -- |
| 220.44 | 0.694 | 9.93 | 1.6 | -- | -- | -- | -- | 0.34 | -- | -- | -- | -- | -- |
| 162.55 | 0.596 | 10 | -- | 1.49 | -- | -- | -- | 0.174 | 20.7 | -- | -- | -- | -- |
| 276.39 | 0.774 | 9.96 | -- | -- | -0.682 | -- | -- | 0.177 | -- | 93 | 1482 | -- | -- |
| 288.3 | 0.793 | 9.97 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 69.78 | humidity | 80 | 1440 | < th | dose dependent | sin | 8 | NA |
| 2 | 69.91 | humidity | 70 | 1440 | > th | dose independent | sin | 9 | NA |
| 4 | 70.00 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 17 |
| 8 | 70.30 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 19 |
| 21 | 70.79 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 14 |
| 39 | 70.95 | humidity | 70 | 1440 | < th | dose independent | sin | 9 | NA |
| 55 | 71.23 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 124 | 72.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 184 | 72.27 | humidity | 80 | 1440 | < th | dose dependent | rect. | 24 | 22 |
| 192 | 72.30 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 200 | 72.31 | humidity | 80 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 214 | 72.33 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 16 |
| 271 | 72.50 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 12 |
| 281 | 72.55 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 9 |
| 294 | 72.63 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 300 | 72.68 | humidity | 50 | 1440 | > th | dose dependent | rect. | 6 | 9 |
| 310 | 72.73 | humidity | 50 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 322 | 72.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 341 | 72.83 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 351 | 72.85 | humidity | 50 | 1440 | > th | dose dependent | sin | 1 | NA |
| 374 | 72.95 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 388 | 73.02 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 395 | 73.05 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 9 |
| 445 | 73.17 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 457 | 73.21 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 475 | 73.25 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 487 | 73.31 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 508 | 73.34 | humidity | 60 | 1440 | > th | dose independent | rect. | 2 | 15 |
| 510 | 73.34 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 17 |
| 518 | 73.35 | humidity | 60 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 523 | 73.35 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 528 | 73.36 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 663 | 73.66 | humidity | 60 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 693 | 73.74 | humidity | 60 | 1440 | > th | dose independent | sin | 0 | NA |
| 704 | 73.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 16 |
| 714 | 73.77 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 747 | 73.81 | humidity | 60 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 822 | 73.89 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 842 | 73.89 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 846 | 73.89 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 870 | 73.92 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 902 | 73.99 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 3 |
| 994 | 74.04 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 2 |