Os04g0482800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Topoisomerase-like protein.
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Os04g0482800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Topoisomerase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.59 | 0.191 | 11.8 | 0.571 | 0.511 | -0.38 | -0.611 | -0.0761 | 0.274 | 6.42 | 11.83 | 2 | -- | -- |
| 16.61 | 0.19 | 11.8 | 0.572 | 0.509 | -0.395 | -0.584 | -- | 0.272 | 6.29 | 11.95 | 2 | -- | -- |
| 17.45 | 0.195 | 11.8 | 0.566 | 0.509 | -0.373 | -- | 0.0229 | 0.277 | 6.53 | 11.83 | 2 | -- | -- |
| 17.46 | 0.195 | 11.8 | 0.565 | 0.51 | -0.372 | -- | -- | 0.277 | 6.54 | 11.83 | 2 | -- | -- |
| 30.04 | 0.255 | 11.8 | 0.586 | -- | -0.431 | -- | 0.0882 | 0.294 | -- | 8.88 | 2 | -- | -- |
| 19.5 | 0.207 | 11.8 | 0.577 | 0.717 | -- | -0.285 | -- | 0.282 | 8.74 | -- | -- | -- | -- |
| 19.76 | 0.208 | 11.8 | 0.568 | 0.717 | -- | -- | -- | 0.283 | 8.81 | -- | -- | -- | -- |
| 30.01 | 0.255 | 11.8 | 0.584 | -- | -0.44 | -- | -- | 0.281 | -- | 8.89 | 2 | -- | -- |
| 25.87 | 0.237 | 11.8 | -- | 0.539 | -0.361 | -- | -- | 0.221 | 6.57 | 12.77 | 2 | -- | -- |
| 48.99 | 0.327 | 11.8 | 0.569 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 28.27 | 0.249 | 11.8 | -- | 0.718 | -- | -- | -- | 0.219 | 8.75 | -- | -- | -- | -- |
| 38.93 | 0.291 | 11.8 | -- | -- | -0.433 | -- | -- | 0.214 | -- | 7.357 | 2 | -- | -- |
| 57.53 | 0.354 | 11.8 | -- | -- | -- | -- | -- | 0.225 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.44 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 5 | 15.79 | radiation | 10.0 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 11 | 16.18 | humidity | 60.0 | 10 | > th | dose independent | rect. | 12 | 8 |
| 12 | 16.22 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 19 | 16.34 | radiation | 10.0 | 30 | < th | dose independent | rect. | 23 | 21 |
| 20 | 16.34 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 5 |
| 22 | 16.44 | temperature | 25.0 | 90 | > th | dose independent | rect. | 20 | 4 |
| 23 | 16.44 | humidity | 60.0 | 10 | > th | dose independent | rect. | 23 | 21 |
| 25 | 16.45 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 16 |
| 28 | 16.46 | radiation | 10.0 | 30 | < th | dose independent | rect. | 23 | 23 |
| 29 | 16.46 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 9 | 16 |
| 32 | 16.50 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 36 | 16.53 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 5 |
| 50 | 16.57 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 18 |
| 54 | 16.59 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 61 | 16.62 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 69 | 16.64 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 10 |
| 81 | 16.68 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 20 | 7 |
| 88 | 16.70 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 13 | 22 |
| 94 | 16.72 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 96 | 16.73 | temperature | 25.0 | 30 | > th | dose independent | rect. | 20 | 21 |
| 101 | 16.74 | temperature | 25.0 | 270 | > th | dose independent | rect. | 20 | 1 |
| 106 | 16.74 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 123 | 16.78 | humidity | 60.0 | 10 | > th | dose independent | rect. | 23 | 23 |
| 130 | 16.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 23 | 21 |
| 160 | 16.84 | radiation | 10.0 | 10 | > th | dose independent | rect. | 13 | 23 |
| 165 | 16.85 | temperature | 25.0 | 30 | > th | dose independent | rect. | 7 | 18 |
| 215 | 16.92 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 230 | 16.94 | radiation | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 235 | 16.94 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 244 | 16.95 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 251 | 16.96 | temperature | 25.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 285 | 16.99 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 291 | 16.99 | radiation | 10.0 | 10 | > th | dose independent | rect. | 9 | 23 |
| 294 | 16.99 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 23 | 11 |
| 309 | 17.00 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 325 | 17.01 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 23 |
| 335 | 17.02 | radiation | 10.0 | 30 | < th | dose independent | rect. | 21 | 23 |
| 336 | 17.02 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 347 | 17.03 | humidity | 60.0 | 10 | > th | dose independent | rect. | 10 | 10 |
| 363 | 17.04 | humidity | 80.0 | 30 | > th | dose independent | rect. | 20 | 3 |
| 380 | 17.04 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 389 | 17.05 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 23 | 12 |
| 400 | 17.06 | temperature | 25.0 | 30 | > th | dose independent | rect. | 11 | 14 |
| 404 | 17.06 | temperature | 25.0 | 30 | > th | dose independent | rect. | 9 | 23 |
| 445 | 17.08 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 468 | 17.09 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 8 |
| 484 | 17.10 | temperature | 30.0 | 30 | < th | dose independent | rect. | 23 | 21 |
| 501 | 17.11 | temperature | 25.0 | 30 | > th | dose independent | rect. | 11 | 23 |
| 537 | 17.13 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 540 | 17.14 | radiation | 10.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 542 | 17.14 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 11 | 14 |
| 590 | 17.17 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 20 | 16 |
| 594 | 17.17 | humidity | 60.0 | 10 | > th | dose independent | rect. | 1 | 19 |
| 597 | 17.17 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 635 | 17.19 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 10 |
| 636 | 17.19 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 12 |
| 653 | 17.20 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 20 | 3 |
| 657 | 17.20 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 664 | 17.20 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 665 | 17.20 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 668 | 17.21 | radiation | 20.0 | 90 | < th | dose independent | rect. | 23 | 11 |
| 680 | 17.21 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 8 | 12 |
| 709 | 17.22 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 713 | 17.23 | radiation | 20.0 | 10 | < th | dose independent | rect. | 23 | 12 |
| 738 | 17.24 | temperature | 25.0 | 90 | > th | dose independent | sin | 13 | NA |
| 740 | 17.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 744 | 17.24 | humidity | 60.0 | 10 | > th | dose independent | rect. | 8 | 12 |
| 747 | 17.24 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 750 | 17.24 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 775 | 17.25 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 777 | 17.25 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 779 | 17.25 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 781 | 17.25 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 782 | 17.25 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 20 | 16 |
| 816 | 17.26 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 22 | 1 |
| 832 | 17.27 | temperature | 25.0 | 90 | < th | dose independent | sin | 13 | NA |
| 833 | 17.27 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 8 |
| 842 | 17.27 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 8 |
| 873 | 17.28 | wind | 3.0 | 30 | > th | dose independent | rect. | 12 | 12 |
| 905 | 17.29 | radiation | 10.0 | 30 | > th | dose independent | rect. | 7 | 11 |
| 915 | 17.29 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 16 |
| 934 | 17.29 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 16 |
| 951 | 17.30 | wind | 3.0 | 10 | < th | dose independent | rect. | 22 | 1 |
| 954 | 17.30 | wind | 9.0 | 30 | < th | dose independent | rect. | 12 | 8 |
| 982 | 17.31 | temperature | 25.0 | 30 | > th | dose independent | no | NA | NA |
| 983 | 17.31 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 8 |
| 999 | 17.31 | temperature | 25.0 | 30 | < th | dose independent | rect. | 23 | 23 |