BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0119500 Os08g0119500|J080315K03
(121 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0119500 Methyltransferase type 11 domain containing pr... 238 6e-64
Os01g0785600 Methyltransferase type 11 domain containing pr... 66 6e-12
Os05g0500700 Methyltransferase type 11 domain containing pr... 63 5e-11
>Os08g0119500 Methyltransferase type 11 domain containing protein
Length = 121
Score = 238 bits (608), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP 60
VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP
Sbjct: 1 VGVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSNVFDHALYPGRFVAEIERTLRP 60
Query: 61 GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRKKRSS 120
GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRKKRSS
Sbjct: 61 GGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFGLDTEVILRKKRSS 120
Query: 121 P 121
P
Sbjct: 121 P 121
>Os01g0785600 Methyltransferase type 11 domain containing protein
Length = 238
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 2 GVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSN---VFDHALYPGRFVAEIERTL 58
GV DA G+DL PPLV R D H PF + FD S+ AL+P RFVAE ERT+
Sbjct: 123 GVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAERTV 182
Query: 59 RPGGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFG-LDTEVILRKK 117
R GG L + H +D+ + LF++S V G T VILRK
Sbjct: 183 RWGGAIALAIERH-----------IDLSTVASLFKKSRVAAAWNATLDGSAATMVILRKN 231
Query: 118 RSS 120
++
Sbjct: 232 SNN 234
>Os05g0500700 Methyltransferase type 11 domain containing protein
Length = 255
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 2 GVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSN---VFDHALYPGRFVAEIERTL 58
GV D GID PPLV R D H PF++ FD FS+ F AL+P RF AE ER +
Sbjct: 131 GVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSRFAAEAERAV 190
Query: 59 RPGGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVV 98
R GG L V H LD + LF+RS +V
Sbjct: 191 RSGGTIALAVDRH-----------LDPSAVAVLFKRSRIV 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.144 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,346,310
Number of extensions: 169362
Number of successful extensions: 383
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 383
Number of HSP's successfully gapped: 3
Length of query: 121
Length of database: 17,035,801
Length adjustment: 87
Effective length of query: 34
Effective length of database: 12,493,183
Effective search space: 424768222
Effective search space used: 424768222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)