FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0500700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Methyltransferase type 11 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0248) R2 : 0.00189
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0485 (0.0523) R2dN8 : 0.00243 R2N8 : 0.00189
σ : 0.467
deviance : 100.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.21 0.456 2.88 -0.173 0.0789 0.66 0.0785 -2.71 0.0665 4.85 -0.0002298 3150 -- --
99.41 0.464 2.84 -0.149 0.0567 0.149 0.0585 -- 0.0481 4.29 -6.128e-06 3290 -- --
93.97 0.451 2.89 -0.228 0.0846 0.851 -- -3.36 0.0713 4.4 0.1337 3000 -- --
99.36 0.464 2.83 -0.152 0.0681 0.152 -- -- 0.0481 6.08 -0.1891 3200 -- --
94.27 0.452 2.92 -0.297 -- 1.18 -- -4.52 0.0731 -- 0.3082 2999 -- --
99.75 0.468 2.84 -0.109 0.0678 -- 0.071 -- 0.0354 5.82 -- -- -- --
99.76 0.468 2.84 -0.108 0.0684 -- -- -- 0.0352 6.08 -- -- -- --
99.6 0.465 2.84 -0.15 -- 0.15 -- -- 0.0495 -- -0.08024 3200 -- --
99.89 0.465 2.83 -- 0.0674 0.0956 -- -- 0.0577 5.98 -0.2642 3360 -- --
100.01 0.467 2.84 -0.106 -- -- -- -- 0.0367 -- -- -- -- --
100.07 0.468 2.83 -- 0.0669 -- -- -- 0.0472 6.16 -- -- -- --
100.11 0.466 2.83 -- -- 0.0987 -- -- 0.06 -- -0.03357 3360 -- --
100.3 0.467 2.84 -- -- -- -- -- 0.0485 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 92.10 radiation 1.0 720 < th dose independent rect. 12 3
2 92.10 radiation 1.0 720 < th dose dependent rect. 12 3
5 92.34 radiation 1.0 90 < th dose independent rect. 14 1
6 92.34 radiation 1.0 90 < th dose dependent rect. 14 1
14 92.68 humidity 90.0 720 > th dose independent rect. 12 1
18 92.68 humidity 90.0 720 > th dose dependent rect. 12 1
25 92.86 temperature 20.0 270 < th dose independent rect. 9 1
42 93.57 wind 1.0 30 < th dose independent rect. 11 13
43 93.61 wind 1.0 30 < th dose independent rect. 23 1
87 94.56 radiation 10.0 30 > th dose independent rect. 17 14
89 94.58 radiation 10.0 30 > th dose dependent rect. 17 14
90 94.70 wind 1.0 30 < th dose independent rect. 11 1
114 95.11 wind 1.0 30 > th dose independent sin 19 NA
118 95.16 humidity 90.0 270 > th dose dependent rect. 20 1
123 95.30 precipitation 0.1 4320 < th dose independent rect. 11 1
124 95.30 precipitation 0.1 4320 < th dose dependent rect. 11 1
129 95.35 precipitation 0.1 4320 > th dose independent rect. 11 1
130 95.35 precipitation 0.1 4320 > th dose dependent rect. 11 1
133 95.37 wind 1.0 4320 < th dose dependent rect. 19 1
141 95.41 humidity 90.0 270 > th dose dependent rect. 20 3
143 95.45 precipitation 0.1 4320 < th dose independent rect. 21 1
144 95.45 precipitation 0.1 4320 > th dose dependent rect. 21 1
145 95.45 precipitation 0.1 4320 < th dose dependent rect. 21 1
146 95.46 precipitation 0.1 4320 > th dose independent rect. 21 1
147 95.47 wind 1.0 30 < th dose dependent rect. 11 1
155 95.51 precipitation 0.1 4320 > th dose independent rect. 8 1
156 95.51 precipitation 0.1 4320 > th dose independent rect. 16 1
157 95.51 precipitation 0.1 4320 > th dose dependent rect. 8 1
163 95.53 precipitation 0.1 4320 > th dose dependent rect. 16 1
168 95.55 precipitation 0.1 4320 < th dose independent rect. 8 1
169 95.55 precipitation 0.1 4320 < th dose dependent rect. 8 1
173 95.58 precipitation 0.1 4320 > th dose independent rect. 16 6
174 95.58 precipitation 0.1 4320 > th dose dependent rect. 16 7
177 95.59 radiation 1.0 1440 < th dose dependent rect. 2 3
189 95.62 precipitation 0.1 4320 < th dose independent rect. 16 6
192 95.62 precipitation 0.1 4320 < th dose dependent rect. 16 6
194 95.63 wind 1.0 4320 < th dose independent rect. 19 1
198 95.63 precipitation 0.1 4320 > th dose dependent rect. 18 4
209 95.64 radiation 1.0 1440 < th dose dependent rect. 19 10
225 95.68 precipitation 0.1 4320 < th dose independent rect. 16 3
228 95.68 precipitation 0.1 4320 > th dose dependent rect. 16 3
230 95.68 precipitation 0.1 4320 < th dose dependent rect. 16 3
232 95.69 precipitation 0.1 4320 < th dose independent rect. 18 4
233 95.69 precipitation 0.1 4320 < th dose dependent rect. 18 4
237 95.70 temperature 20.0 1440 > th dose independent rect. 9 1
246 95.71 precipitation 0.1 4320 < th dose independent rect. 18 1
249 95.71 precipitation 0.1 4320 < th dose dependent rect. 18 1
253 95.72 precipitation 0.1 4320 > th dose independent rect. 18 1
258 95.72 precipitation 0.1 4320 > th dose independent rect. 18 4
321 95.83 precipitation 0.1 4320 > th dose dependent rect. 18 1
322 95.84 wind 1.0 4320 > th dose independent rect. 19 1
361 95.93 precipitation 0.1 4320 > th dose dependent rect. 8 15
364 95.94 radiation 1.0 720 < th dose independent rect. 12 13
367 95.94 precipitation 0.1 4320 > th dose dependent rect. 11 12
378 95.96 atmosphere 995.0 14400 > th dose independent rect. 2 2
381 95.96 precipitation 0.1 4320 < th dose independent rect. 8 15
386 95.96 precipitation 0.1 4320 < th dose dependent rect. 8 15
394 95.97 precipitation 0.1 4320 > th dose independent rect. 8 15
404 95.98 precipitation 0.1 4320 < th dose independent rect. 11 12
407 95.98 precipitation 0.1 4320 < th dose dependent rect. 11 12
411 95.99 precipitation 0.1 4320 > th dose independent rect. 11 12
423 96.00 precipitation 0.1 4320 < th dose independent rect. 8 4
428 96.00 radiation 1.0 720 < th dose independent rect. 12 11
430 96.00 precipitation 0.1 4320 < th dose dependent rect. 8 4
437 96.01 atmosphere 995.0 14400 > th dose independent rect. 21 3
450 96.02 atmosphere 995.0 14400 > th dose independent rect. 23 1
455 96.02 atmosphere 995.0 14400 > th dose independent rect. 20 8
465 96.03 atmosphere 995.0 14400 > th dose independent rect. 21 1
472 96.03 atmosphere 995.0 14400 > th dose independent rect. 22 6
505 96.04 wind 1.0 30 < th dose independent rect. 6 18
517 96.05 precipitation 0.1 4320 > th dose independent rect. 8 4
524 96.05 atmosphere 995.0 14400 > th dose independent rect. 20 16
527 96.05 precipitation 0.1 4320 > th dose dependent rect. 8 4
540 96.06 atmosphere 995.0 14400 > th dose independent rect. 2 10
541 96.06 atmosphere 995.0 14400 > th dose independent rect. 22 14
544 96.06 atmosphere 995.0 14400 < th dose dependent sin 8 NA
546 96.07 atmosphere 995.0 14400 < th dose independent rect. 1 1
551 96.07 atmosphere 995.0 14400 < th dose independent rect. 21 1
713 96.07 atmosphere 995.0 14400 < th dose dependent rect. 1 1
718 96.07 atmosphere 995.0 14400 < th dose dependent rect. 21 1
956 96.11 radiation 1.0 720 > th dose independent rect. 9 8
974 96.12 radiation 1.0 720 < th dose dependent rect. 11 14