BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0500700 Os05g0500700|Os05g0500700
(255 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G16030.1 | chr2:6974196-6974891 REVERSE LENGTH=232 103 1e-22
AT1G24480.1 | chr1:8676440-8677159 REVERSE LENGTH=240 74 7e-14
AT4G26730.1 | chr4:13472579-13473309 FORWARD LENGTH=209 73 1e-13
AT4G24805.1 | chr4:12785315-12786058 FORWARD LENGTH=248 69 3e-12
>AT2G16030.1 | chr2:6974196-6974891 REVERSE LENGTH=232
Length = 231
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 109/230 (47%), Gaps = 11/230 (4%)
Query: 14 MDRRVQRL---VSGVXXXXXTVSLLYLISHASTSCF-PGATTLPLARFPRTSCDAASRRV 69
M+R V+++ VS V TV ++ +I +C P A + P FPR++CD++ R+
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCISPEAPSKPHTHFPRSTCDSSPRQH 60
Query: 70 VPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAVDALRA 129
+P HA+ AL
Sbjct: 61 LP--LPKKNARIWSSGAWKSRLYSFSTYFLRFRDLGFIQNHTKALCLSAGAGHALMALSQ 118
Query: 130 EGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSRFAAEAERA 189
G+ DVT ++ VD PLV+RADPH+LPF DG FD F+ A + ALFP +F E ER
Sbjct: 119 IGLSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFT---AHLAEALFPWQFVEEMERT 175
Query: 190 VRSGGTIALAVDRHL--DPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQ 237
VR GG ++VD D +A LF S++VD ++T++GS+ ++F+
Sbjct: 176 VRRGGFCVVSVDECGGDDVRDIARLFHNSKVVDVANVTLEGSKKTSILFK 225
>AT1G24480.1 | chr1:8676440-8677159 REVERSE LENGTH=240
Length = 239
Score = 73.9 bits (180), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 122 HAVDALRAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSR 181
V+AL+ GV D G+D V +PPLV + D HH PF D FD FS+ F AL+P +
Sbjct: 106 QEVEALKRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSN---VFDHALYPDK 162
Query: 182 FAAEAERAVRSGGTIALAV------DRH-----LDPSAVAVLFKRSRIVDQRDL 224
F E ER +R GG L V D++ A+ LF++S +V R++
Sbjct: 163 FVGEIERTLRPGGLCVLHVALSTRSDKYSANDLFSVEALVKLFRQSEVVHVRNV 216
>AT4G26730.1 | chr4:13472579-13473309 FORWARD LENGTH=209
Length = 208
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 5/118 (4%)
Query: 122 HAVDALRAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSR 181
HA AL G+ DVT ++ VD PLV+RADPH+LPF D FD +F+ A + ALFP R
Sbjct: 76 HAPMALSQIGLSDVTAVELVDSIPLVKRADPHNLPFFDRVFDFVFT---AHLAEALFPWR 132
Query: 182 FAAEAERAVRSGGTIALAVDRHL--DPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQ 237
F E ER VR GG +AVD D +A F S+IVD ++T++ + ++F+
Sbjct: 133 FVEEMERTVRRGGFCVVAVDECSGDDVRDIARFFHNSKIVDVANVTLERVKRTSILFK 190
>AT4G24805.1 | chr4:12785315-12786058 FORWARD LENGTH=248
Length = 247
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 122 HAVDALRAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSR 181
V ALR GV D GID V PPLV + D H PF + FD FS+ F AL+P +
Sbjct: 121 QEVAALRLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSN---VFDHALYPEK 177
Query: 182 FAAEAERAVRSGGTIALAV------DRH-----LDPSAVAVLFKRSRIVDQRDL 224
F E ER ++ GG L V D++ L + LFKRS++V+ R +
Sbjct: 178 FVGEIERTLKPGGVCVLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVEMRKI 231
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,701,756
Number of extensions: 121231
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 4
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 110 (47.0 bits)