BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0500700 Os05g0500700|Os05g0500700
(255 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0500700 Methyltransferase type 11 domain containing pr... 353 7e-98
Os01g0785600 Methyltransferase type 11 domain containing pr... 177 5e-45
>Os05g0500700 Methyltransferase type 11 domain containing protein
Length = 255
Score = 353 bits (906), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 190/255 (74%), Positives = 190/255 (74%)
Query: 1 MVXXXXXXXXXXXMDRRVQRLVSGVXXXXXTVSLLYLISHASTSCFPGATTLPLARFPRT 60
MV MDRRVQRLVSGV TVSLLYLISHASTSCFPGATTLPLARFPRT
Sbjct: 1 MVAPTTTAASPPAMDRRVQRLVSGVAAAAATVSLLYLISHASTSCFPGATTLPLARFPRT 60
Query: 61 SCDAASRRVVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
SCDAASRRVVPP
Sbjct: 61 SCDAASRRVVPPGRRLAKLRASARWRRRSVALASSSAFASLRGLRLLAGSSRALCLAAGA 120
Query: 121 XHAVDALRAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPS 180
HAVDALRAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPS
Sbjct: 121 GHAVDALRAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPS 180
Query: 181 RFAAEAERAVRSGGTIALAVDRHLDPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQKLA 240
RFAAEAERAVRSGGTIALAVDRHLDPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQKLA
Sbjct: 181 RFAAEAERAVRSGGTIALAVDRHLDPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQKLA 240
Query: 241 VIAEIPAFQTGQGLY 255
VIAEIPAFQTGQGLY
Sbjct: 241 VIAEIPAFQTGQGLY 255
>Os01g0785600 Methyltransferase type 11 domain containing protein
Length = 238
Score = 177 bits (450), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 106/231 (45%), Positives = 130/231 (56%), Gaps = 7/231 (3%)
Query: 14 MDRRVQRLVSGVXXXXXTVSLLYLIS---HASTSCF---PGATTLPLARFPRTSCDAASR 67
MD V+RL++ V V+ L+ H+S+SCF P ++L LA FPRTSCDAASR
Sbjct: 1 MDGHVRRLLNRVSIALAAVATAALLQLFRHSSSSCFVGSPAYSSLSLAPFPRTSCDAASR 60
Query: 68 RVVPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAVDAL 127
RVV P AVDAL
Sbjct: 61 RVVDPNLRLAKLRSSPRWRRRSAALSTSVFPRLRRLRLLRRSSRVLCVAAGAG-QAVDAL 119
Query: 128 RAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSRFAAEAE 187
GVGD TG+D VDFPPLVRRADPH+LPF DG FD++ SD+P +GALFPSRF AEAE
Sbjct: 120 HVAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAE 179
Query: 188 RAVRSGGTIALAVDRHLDPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQK 238
R VR GG IALA++RH+D S VA LFK+SR+ + T+DGS M+I +K
Sbjct: 180 RTVRWGGAIALAIERHIDLSTVASLFKKSRVAAAWNATLDGSAATMVILRK 230
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,351,644
Number of extensions: 226947
Number of successful extensions: 648
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 4
Length of query: 255
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 156
Effective length of database: 11,866,615
Effective search space: 1851191940
Effective search space used: 1851191940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 155 (64.3 bits)