FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0785600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Methyltransferase type 11 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0216) R2 : 0.0174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.129 (0.0454) R2dN8 : 0.0225 R2N8 : 0.0174
σ : 0.406
deviance : 75.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
72.82 0.401 2.88 -0.205 0.155 0.433 0.351 -2.93 0.136 5.33 30.11 12 -- --
73.99 0.401 2.86 0.00857 0.158 0.171 0.433 -- 0.162 5.17 30.2 13 -- --
73.12 0.398 2.89 -0.211 0.154 0.43 -- -3.04 0.133 5.28 30.14 12 -- --
74.29 0.401 2.86 0.00961 0.156 0.129 -- -- 0.143 5.43 30.2 12 -- --
74.26 0.401 2.89 -0.205 -- 0.377 -- -3.11 0.132 -- 30.1 12 -- --
74.5 0.405 2.87 0.0192 0.127 -- 0.329 -- 0.13 5.74 -- -- -- --
74.77 0.405 2.87 0.0214 0.129 -- -- -- 0.129 5.95 -- -- -- --
75.46 0.405 2.87 0.0247 -- 0.0873 -- -- 0.143 -- 30.2 12 -- --
74.28 0.401 2.86 -- 0.156 0.136 -- -- 0.139 5.49 30.15 12 -- --
75.63 0.406 2.87 0.0252 -- -- -- -- 0.132 -- -- -- -- --
74.78 0.405 2.87 -- 0.129 -- -- -- 0.126 5.95 -- -- -- --
75.46 0.405 2.87 -- -- 0.0781 -- -- 0.136 -- 30.2 12 -- --
75.64 0.406 2.87 -- -- -- -- -- 0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.53 temperature 30.0 10 > th dose independent rect. 14 1
3 62.53 wind 1.0 30 < th dose dependent rect. 13 1
9 62.96 wind 1.0 90 < th dose independent rect. 13 1
51 70.17 wind 5.0 270 > th dose dependent rect. 2 5
52 70.18 wind 5.0 270 > th dose dependent rect. 2 2
56 70.24 wind 5.0 270 > th dose independent rect. 2 1
57 70.26 wind 5.0 270 > th dose independent rect. 2 3
63 70.79 temperature 25.0 10 > th dose dependent rect. 13 1
66 70.87 atmosphere 1005.0 10 < th dose independent rect. 5 1
78 70.90 radiation 20.0 10 > th dose independent rect. 13 1
82 70.92 wind 1.0 10 > th dose independent rect. 4 3
83 70.94 wind 1.0 90 > th dose independent rect. 4 1
87 71.10 wind 1.0 90 > th dose dependent rect. 4 1
91 71.20 wind 1.0 720 < th dose dependent rect. 8 1
93 71.36 atmosphere 1010.0 30 < th dose dependent rect. 6 1
104 71.60 wind 1.0 720 < th dose independent rect. 8 1
113 71.81 humidity 90.0 10 > th dose independent rect. 6 1
115 71.81 humidity 80.0 10 > th dose dependent rect. 6 1
117 71.83 temperature 30.0 10 < th dose dependent rect. 4 3
126 71.95 atmosphere 1000.0 10 > th dose independent rect. 4 3
129 72.04 wind 3.0 10 < th dose independent rect. 4 3
132 72.05 atmosphere 995.0 4320 > th dose independent rect. 6 2
134 72.06 wind 9.0 1440 < th dose independent rect. 6 2
135 72.06 temperature 10.0 1440 > th dose independent rect. 6 2
138 72.06 temperature 30.0 1440 < th dose independent rect. 6 2
142 72.06 humidity 50.0 1440 > th dose independent rect. 6 2
148 72.06 atmosphere 1015.0 1440 < th dose independent rect. 6 2
149 72.06 temperature 10.0 1440 > th dose independent rect. 8 22
155 72.09 humidity 80.0 10 > th dose independent rect. 4 3
160 72.14 temperature 25.0 30 < th dose dependent rect. 6 1
165 72.16 temperature 20.0 90 < th dose independent rect. 5 1
172 72.17 temperature 20.0 10 < th dose independent rect. 5 1
191 72.21 radiation 40.0 1440 < th dose independent rect. 6 2
198 72.26 radiation 10.0 10 < th dose independent rect. 4 3
199 72.26 humidity 50.0 10 > th dose dependent rect. 4 3
202 72.27 precipitation 0.1 10 < th dose independent rect. 4 3
204 72.27 precipitation 0.1 10 < th dose dependent rect. 4 3
209 72.28 temperature 10.0 10 > th dose independent rect. 4 3
211 72.28 temperature 30.0 10 < th dose independent rect. 4 3
213 72.28 humidity 50.0 10 > th dose independent rect. 4 3
217 72.28 atmosphere 1015.0 10 < th dose independent rect. 4 3
221 72.28 wind 9.0 10 < th dose independent rect. 7 21
222 72.28 temperature 10.0 10 > th dose independent rect. 7 21
237 72.33 wind 1.0 30 > th dose dependent rect. 4 3
252 72.37 radiation 40.0 10 < th dose dependent rect. 4 3
254 72.37 temperature 20.0 30 < th dose dependent rect. 5 5
289 72.43 temperature 20.0 10 < th dose independent rect. 5 7
297 72.44 atmosphere 1015.0 10 < th dose dependent rect. 4 3
298 72.45 atmosphere 1000.0 90 > th dose independent rect. 5 1
306 72.45 atmosphere 995.0 10 > th dose independent rect. 7 21
308 72.46 radiation 10.0 30 < th dose independent rect. 6 1
314 72.46 radiation 1.0 30 > th dose independent rect. 18 13
327 72.47 atmosphere 995.0 10 > th dose dependent rect. 4 3
334 72.48 temperature 20.0 30 < th dose dependent rect. 5 11
340 72.49 wind 1.0 720 < th dose dependent rect. 8 6
351 72.50 radiation 10.0 30 < th dose dependent rect. 6 1
389 72.53 radiation 10.0 10 < th dose independent rect. 4 6
407 72.56 temperature 20.0 10 < th dose independent rect. 5 5
413 72.57 radiation 1.0 30 > th dose independent rect. 5 2
427 72.57 wind 1.0 4320 < th dose dependent rect. 24 1
441 72.59 atmosphere 1015.0 10 < th dose independent rect. 7 21
445 72.60 precipitation 0.1 10 < th dose independent rect. 7 21
451 72.60 precipitation 0.1 10 < th dose dependent rect. 7 21
452 72.61 humidity 70.0 10 < th dose independent rect. 13 1
458 72.61 wind 9.0 10 < th dose dependent rect. 4 3
476 72.63 wind 1.0 720 < th dose dependent rect. 8 17
504 72.65 temperature 30.0 10 < th dose independent rect. 7 21
522 72.66 wind 1.0 4320 < th dose dependent rect. 21 5
538 72.69 precipitation 0.1 720 < th dose independent rect. 21 6
543 72.69 precipitation 0.1 720 < th dose dependent rect. 21 6
545 72.70 temperature 30.0 10 > th dose independent sin 14 NA
553 72.70 wind 1.0 4320 < th dose dependent rect. 20 10
567 72.72 wind 1.0 720 > th dose independent rect. 7 9
634 72.79 temperature 10.0 10 > th dose dependent rect. 4 3
635 72.79 radiation 20.0 10 < th dose dependent rect. 4 6
643 72.80 wind 1.0 4320 < th dose dependent rect. 23 7
649 72.81 wind 1.0 10 > th dose independent rect. 4 18
733 72.85 atmosphere 1005.0 10 < th dose independent rect. 2 5
744 72.85 humidity 90.0 10 > th dose dependent rect. 4 8
750 72.86 wind 1.0 720 > th dose independent rect. 19 2
752 72.86 atmosphere 1000.0 270 > th dose independent rect. 2 4
759 72.86 wind 1.0 10 > th dose independent rect. 7 21
829 72.88 wind 1.0 4320 < th dose independent rect. 24 1
832 72.88 temperature 10.0 10 > th dose independent rect. 6 1
839 72.88 humidity 50.0 10 > th dose independent rect. 6 1
854 72.88 precipitation 0.1 10 < th dose independent rect. 6 1
873 72.88 temperature 15.0 270 > th dose independent rect. 6 11
878 72.88 temperature 10.0 10 > th dose independent rect. 7 23
879 72.88 radiation 30.0 10 < th dose dependent rect. 6 1
881 72.88 precipitation 0.1 10 < th dose dependent rect. 6 1
894 72.89 precipitation 0.1 90 < th dose independent rect. 19 12
897 72.89 temperature 25.0 30 > th dose dependent rect. 4 3
901 72.89 precipitation 0.1 90 < th dose dependent rect. 19 12
922 72.90 wind 7.0 270 < th dose independent rect. 17 13
929 72.90 temperature 25.0 30 > th dose dependent rect. 6 1
947 72.91 wind 1.0 90 > th dose independent rect. 4 17
971 72.92 wind 7.0 90 < th dose independent rect. 19 12
974 72.92 wind 9.0 10 < th dose dependent rect. 6 1
975 72.92 wind 1.0 4320 < th dose dependent rect. 4 2
982 72.93 precipitation 0.1 720 > th dose independent rect. 20 1
988 72.93 humidity 80.0 270 > th dose independent rect. 2 4
993 72.93 atmosphere 1015.0 270 < th dose independent rect. 6 11
995 72.93 temperature 10.0 270 > th dose independent rect. 17 13
997 72.93 radiation 20.0 270 < th dose independent rect. 17 13