BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0785600 Os01g0785600|AK111308
(238 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G16030.1 | chr2:6974196-6974891 REVERSE LENGTH=232 123 8e-29
AT1G24480.1 | chr1:8676440-8677159 REVERSE LENGTH=240 85 4e-17
AT4G26730.1 | chr4:13472579-13473309 FORWARD LENGTH=209 84 7e-17
AT4G24805.1 | chr4:12785315-12786058 FORWARD LENGTH=248 77 1e-14
>AT2G16030.1 | chr2:6974196-6974891 REVERSE LENGTH=232
Length = 231
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 116/237 (48%), Gaps = 8/237 (3%)
Query: 1 MDGHVRRLLNRVSIXXXXXXXXXXXXXFRHSSSSCFVGSPAYSSLSLAPFPRTSCDAASR 60
M+ +V ++L RVSI + +C SP S FPR++CD++ R
Sbjct: 1 MERNVEKMLKRVSIVFLSIGTVLMVIMILQTPKTCI--SPEAPSKPHTHFPRSTCDSSPR 58
Query: 61 RVVDPNLRLAKXXXXXXXXXXXXXXXTSVFPXXXXXXXXXXXXXVLCVAAGAGQAVDALH 120
+ + + A+ T F LC++AGAG A+ AL
Sbjct: 59 QHLPLPKKNARIWSSGAWKSRLYSFST-YFLRFRDLGFIQNHTKALCLSAGAGHALMALS 117
Query: 121 VAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAER 180
G+ D T V+LVD PLV+RADPHNLPFFDGVFD + L ALFP +FV E ER
Sbjct: 118 QIGLSDVTAVELVDSIPLVKRADPHNLPFFDGVFDFAFTAH---LAEALFPWQFVEEMER 174
Query: 181 TVRWGGAIALAIER--HIDLSTVASLFKKSRVAAAWNATLDGSAATMVILRKNSNNT 235
TVR GG ++++ D+ +A LF S+V N TL+GS T ++ + + T
Sbjct: 175 TVRRGGFCVVSVDECGGDDVRDIARLFHNSKVVDVANVTLEGSKKTSILFKVQDSPT 231
>AT1G24480.1 | chr1:8676440-8677159 REVERSE LENGTH=240
Length = 239
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 75/146 (51%), Gaps = 25/146 (17%)
Query: 106 LCVAAGAGQAVDALHVAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMAL 165
LC+ A GQ V+AL GV D+ G+DLV +PPLV + D H+ PF D FD S+
Sbjct: 98 LCLGARVGQEVEALKRVGVNDSVGMDLVPYPPLVVKGDFHHQPFDDETFDFEFSN---VF 154
Query: 166 TGALFPSRFVAEAERTVRWGGAIALAIERHIDLST---------------VASLFKKSRV 210
AL+P +FV E ERT+R GG L H+ LST + LF++S V
Sbjct: 155 DHALYPDKFVGEIERTLRPGGLCVL----HVALSTRSDKYSANDLFSVEALVKLFRQSEV 210
Query: 211 AAAWNATLDGSAA-TMVILRKNSNNT 235
N +DG T V+ RK +++
Sbjct: 211 VHVRN--VDGFGLDTEVVFRKKRDSS 234
>AT4G26730.1 | chr4:13472579-13473309 FORWARD LENGTH=209
Length = 208
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 106 LCVAAGAGQAVDALHVAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMAL 165
LC++ GAG A AL G+ D T V+LVD PLV+RADPHNLPFFD VFD V + L
Sbjct: 68 LCLSDGAGHAPMALSQIGLSDVTAVELVDSIPLVKRADPHNLPFFDRVFDFVFTAH---L 124
Query: 166 TGALFPSRFVAEAERTVRWGGAIALAIER--HIDLSTVASLFKKSRVAAAWNATLDGSAA 223
ALFP RFV E ERTVR GG +A++ D+ +A F S++ N TL+
Sbjct: 125 AEALFPWRFVEEMERTVRRGGFCVVAVDECSGDDVRDIARFFHNSKIVDVANVTLERVKR 184
Query: 224 TMVILR 229
T ++ +
Sbjct: 185 TSILFK 190
>AT4G24805.1 | chr4:12785315-12786058 FORWARD LENGTH=248
Length = 247
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 17/140 (12%)
Query: 106 LCVAAGAGQAVDALHVAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMAL 165
L + A GQ V AL + GV D+ G+DLV PPLV + D H PF + FD S+
Sbjct: 113 LSIGARVGQEVAALRLIGVEDSVGIDLVPRPPLVVKGDFHAQPFDEETFDFEFSN---VF 169
Query: 166 TGALFPSRFVAEAERTVRWGGAIALAI------ERH-----IDLSTVASLFKKSRVAAAW 214
AL+P +FV E ERT++ GG L + +++ + + + LFK+S+V
Sbjct: 170 DHALYPEKFVGEIERTLKPGGVCVLHVSISGKTDKYSANDLLSVKPLVKLFKRSKVVEM- 228
Query: 215 NATLDGSAA-TMVILRKNSN 233
+DG T ++ RKN N
Sbjct: 229 -RKIDGFGLDTEIVFRKNMN 247
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,979,274
Number of extensions: 129345
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 4
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 110 (47.0 bits)