BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0785600 Os01g0785600|AK111308
         (238 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0785600  Methyltransferase type 11 domain containing pr...   381   e-106
Os05g0500700  Methyltransferase type 11 domain containing pr...   205   3e-53
Os08g0119500  Methyltransferase type 11 domain containing pr...    66   2e-11

>Os01g0785600 Methyltransferase type 11 domain containing protein
          Length = 238

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/238 (82%), Positives = 197/238 (82%)

Query: 1   MDGHVRRLLNRVSIXXXXXXXXXXXXXFRHSSSSCFVGSPAYSSLSLAPFPRTSCDAASR 60
           MDGHVRRLLNRVSI             FRHSSSSCFVGSPAYSSLSLAPFPRTSCDAASR
Sbjct: 1   MDGHVRRLLNRVSIALAAVATAALLQLFRHSSSSCFVGSPAYSSLSLAPFPRTSCDAASR 60

Query: 61  RVVDPNLRLAKXXXXXXXXXXXXXXXTSVFPXXXXXXXXXXXXXVLCVAAGAGQAVDALH 120
           RVVDPNLRLAK               TSVFP             VLCVAAGAGQAVDALH
Sbjct: 61  RVVDPNLRLAKLRSSPRWRRRSAALSTSVFPRLRRLRLLRRSSRVLCVAAGAGQAVDALH 120

Query: 121 VAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAER 180
           VAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAER
Sbjct: 121 VAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAER 180

Query: 181 TVRWGGAIALAIERHIDLSTVASLFKKSRVAAAWNATLDGSAATMVILRKNSNNTKQH 238
           TVRWGGAIALAIERHIDLSTVASLFKKSRVAAAWNATLDGSAATMVILRKNSNNTKQH
Sbjct: 181 TVRWGGAIALAIERHIDLSTVASLFKKSRVAAAWNATLDGSAATMVILRKNSNNTKQH 238



>Os05g0500700 Methyltransferase type 11 domain containing protein
          Length = 255

 Score =  205 bits (521), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 141/231 (61%), Gaps = 7/231 (3%)

Query: 1   MDGHVRRLLNRVSIXXXXXXXXXXXXXFRHSSSSCFVGSPAYSSLSLAPFPRTSCDAASR 60
           MD  V+RL++ V+                H+S+SCF   P  ++L LA FPRTSCDAASR
Sbjct: 14  MDRRVQRLVSGVA---AAAATVSLLYLISHASTSCF---PGATTLPLARFPRTSCDAASR 67

Query: 61  RVVDPNLRLAKXXXXXXXXXXXXXXXTSVFPXXXXXXXXXX-XXXVLCVAAGAGQAVDAL 119
           RVV P  RLAK               +S                  LC+AAGAG AVDAL
Sbjct: 68  RVVPPGRRLAKLRASARWRRRSVALASSSAFASLRGLRLLAGSSRALCLAAGAGHAVDAL 127

Query: 120 HVAGVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAE 179
              GVGD TG+D VDFPPLVRRADPH+LPF DG FD++ SD+P   +GALFPSRF AEAE
Sbjct: 128 RAEGVGDVTGIDFVDFPPLVRRADPHHLPFSDGAFDLIFSDDPAGFSGALFPSRFAAEAE 187

Query: 180 RTVRWGGAIALAIERHIDLSTVASLFKKSRVAAAWNATLDGSAATMVILRK 230
           R VR GG IALA++RH+D S VA LFK+SR+    + T+DGS   M+I +K
Sbjct: 188 RAVRSGGTIALAVDRHLDPSAVAVLFKRSRIVDQRDLTMDGSQVRMLIFQK 238



>Os08g0119500 Methyltransferase type 11 domain containing protein
          Length = 121

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 60/123 (48%), Gaps = 15/123 (12%)

Query: 123 GVGDATGVDLVDFPPLVRRADPHNLPFFDGVFDVVLSDEPMALTGALFPSRFVAEAERTV 182
           GV DA G+DL   PPLV R D H  PF +  FD   S+       AL+P RFVAE ERT+
Sbjct: 2   GVRDAVGIDLAPAPPLVVRGDFHAQPFANDTFDFEFSN---VFDHALYPGRFVAEIERTL 58

Query: 183 RWGGAIALAIERH-----------IDLSTVASLFKKSRVAAAWNATLDGSAATMVILRKN 231
           R GG   L +  H           +D+  +  LF++S V         G   T VILRK 
Sbjct: 59  RPGGVAVLHVAVHRRGDKYSANDLLDVHGLVGLFRRSDVVRISKVDAFG-LDTEVILRKK 117

Query: 232 SNN 234
            ++
Sbjct: 118 RSS 120



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,691,017
Number of extensions: 237072
Number of successful extensions: 533
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 532
Number of HSP's successfully gapped: 3
Length of query: 238
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 140
Effective length of database: 11,918,829
Effective search space: 1668636060
Effective search space used: 1668636060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 154 (63.9 bits)