BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0103000 Os08g0103000|AK067246
(190 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0103000 Amino acid-binding ACT domain containing protein 308 2e-84
Os09g0544300 Amino acid-binding ACT domain containing protein 100 6e-22
Os06g0724900 Amino acid-binding ACT domain containing protein 85 3e-17
Os07g0475900 Amino acid-binding ACT domain containing protein 80 1e-15
>Os08g0103000 Amino acid-binding ACT domain containing protein
Length = 190
Score = 308 bits (788), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 156/190 (82%), Positives = 156/190 (82%)
Query: 1 MEDLSLERRRRNDTGDNTGSMSISSRYPKTKLIHEIIFSSXXXXXXXXXXXXXXXXXXXN 60
MEDLSLERRRRNDTGDNTGSMSISSRYPKTKLIHEIIFSS N
Sbjct: 1 MEDLSLERRRRNDTGDNTGSMSISSRYPKTKLIHEIIFSSLDKPKLLSRLTLLLSEVGLN 60
Query: 61 IREAHVYSTTDGFCLDVFVVDGWDTEETDDLIIKIKEALSHKXXXXXXXXXXXXXXXQQK 120
IREAHVYSTTDGFCLDVFVVDGWDTEETDDLIIKIKEALSHK QQK
Sbjct: 61 IREAHVYSTTDGFCLDVFVVDGWDTEETDDLIIKIKEALSHKNASPSNSTNSSASTNQQK 120
Query: 121 IAELQQQVGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEF 180
IAELQQQVGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEF
Sbjct: 121 IAELQQQVGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEF 180
Query: 181 LQEILILRQC 190
LQEILILRQC
Sbjct: 181 LQEILILRQC 190
>Os09g0544300 Amino acid-binding ACT domain containing protein
Length = 603
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 16/201 (7%)
Query: 1 MEDLSLERRRRNDTGDNTGSMSISSRYPKTKLIHEIIFSSXXXXXXXXXXXXXXXXXXXN 60
+E L+LE + ++ S +++ R +HEI FS+ N
Sbjct: 179 LEALALEASKSQGQDHDSTSDNVNYR-----PMHEITFSTIDKPKLLSELTSLLGELGLN 233
Query: 61 IREAHVYSTTDGFCLDVFVVDGWDTEETDDLIIKIKEAL-----------SHKXXXXXXX 109
I+EAH +ST DG+ LDVFVV GW EET+DLI +++ + +H
Sbjct: 234 IQEAHAFSTNDGYSLDVFVVVGWHDEETEDLIESVRKEIGKIDETQGWSTTHSWSSPVEN 293
Query: 110 XXXXXXXXQQKIAELQQQVGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRD 169
+ + + EID LL G K+A+GS DLYRGTY DVA+K+L+
Sbjct: 294 MQIGENSAADHVEIPRDGASEWEIDVKLLKFGNKVASGSYGDLYRGTYCSQDVAIKVLKP 353
Query: 170 SHFNNPSEVEFLQEILILRQC 190
N + EF QE+ I+R+
Sbjct: 354 ERINADMQREFAQEVYIMRKV 374
>Os06g0724900 Amino acid-binding ACT domain containing protein
Length = 564
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 31 KLIHEIIFSSXXXXXXXXXXXXXXXXXXXNIREAHVYSTTDGFCLDVFVVDGWDTEETDD 90
+ +HEI F+S +I+E H ST DG+ LD+F+V GWD +ET
Sbjct: 168 RPMHEITFASDDKPKGLTQLSSLLGNLNLDIKEVHALSTNDGYFLDIFIVIGWDHKETQL 227
Query: 91 LIIKIKEALSHKXXXXXXXXXXXXXXXQQKIAELQQQVGDS--------------EIDWN 136
L +EAL + ++A Q + EI+++
Sbjct: 228 L----EEALEKEIHNYEPQMPSKSSCWPPELAGKQSLINSQVNHVQIPKDNTDEWEINFD 283
Query: 137 LLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILILRQ 189
+L EK+A+G+ DLYRGTY G DVA+K+L+ N + EF +E+ I+R+
Sbjct: 284 VLDIQEKVASGTYGDLYRGTYFGEDVAIKVLKSDRLNENMQEEFNEEVFIMRK 336
>Os07g0475900 Amino acid-binding ACT domain containing protein
Length = 438
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 31 KLIHEIIFSSXXXXXXXXXXXXXXXXXXXNIREAHVYSTTDGFCLDVFVVDGWDTEETD- 89
+ HEIIF+ NI+EAH +ST+DG+ LD+FVVDGW + E D
Sbjct: 46 RCFHEIIFACDDKPKLLSQLTALLGELGLNIQEAHAFSTSDGYSLDIFVVDGW-SHEVDV 104
Query: 90 --DLIIKIKEALSHKX---XXXXXXXXXXXXXXQQKIAELQQQVGDS----EIDWNLLTT 140
D + + E + +K A+ Q D+ E+D LL
Sbjct: 105 LRDALRRGVEKIKYKAWPLVQSMPTRTGHELMEDSPPADFVQIPADATDVWEVDPRLLKF 164
Query: 141 GEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILILRQ 189
K+A+GS DLY GTY DVA+K+L+ + EF QE+ I+++
Sbjct: 165 ERKLASGSFGDLYHGTYCSQDVAIKVLKPERVSVDMLREFAQEVYIMKK 213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,930,235
Number of extensions: 144109
Number of successful extensions: 439
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 4
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)