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Os07g0475900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid-binding ACT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.95 (0.0592) R2 : 0.754
β1 : -8.77 (0.263) R2dD : 1.03 R2D : 0.38
β2 : 1.92 (0.134) R2dC : 0.117 R2C : 0.0929
β3 : 3.5 (0.246) R2dE : 0.122 R2E : -0.0572
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.9 (1.25) R2dD*E : 0.132 R2D*E : -0.295
γ1 : -0.627 (0.123) R2dN8 : 0.0194 R2N8 : -0.0361
σ : 1.04
deviance : 502.96
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C
peak time of C : 23.2
E
wheather : radiation
threshold : 1.215
memory length : 1439
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.2
open length of G : 11.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
496.58 1.05 6.95 -8.93 1.81 3.43 -1.55 15.1 -0.619 23.4 1.11 1442 18.2 11.1
596.05 1.14 7.13 -7.2 1.17 3.33 -1.4 -- -0.589 23.1 2.652 1449 17.8 11.8
502.96 1.04 6.95 -8.77 1.92 3.5 -- 14.9 -0.627 23.2 1.215 1439 18.2 11.1
587.58 1.13 7.13 -6.71 1.17 3.16 -- -- -0.622 23.1 2.728 1452 17.9 11.9
628.22 1.17 6.99 -8.37 -- 4.79 -- 13 -0.745 -- 1.058 1451 18.2 11
835.81 1.36 7.09 -6.21 1.83 -- -1.1 -- -0.386 22.9 -- -- -- --
840.7 1.36 7.09 -6.16 1.84 -- -- -- -0.381 22.8 -- -- -- --
609.12 1.15 7.15 -6.81 -- 3.92 -- -- -0.632 -- 2.919 1470 17.8 11.9
1386.79 1.73 6.97 -- 1.69 4.19 -- -- 0.6 0.113 1.372 1442 19.4 11.4
1050.38 1.51 7.04 -6.13 -- -- -- -- -0.369 -- -- -- -- --
1842.32 2.01 6.94 -- 1.8 -- -- -- 0.306 22.5 -- -- -- --
1025.68 1.49 7 -- -- 4.2 -- -- 0.92 -- 0.002691 47520 19.4 11.5
2040.7 2.11 6.89 -- -- -- -- -- 0.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 517.98 temperature 25 14400 > th dose independent rect. 11 1
2 522.68 radiation 1 14400 < th dose dependent rect. 4 1
3 522.96 temperature 25 14400 < th dose independent rect. 11 1
17 533.80 radiation 1 1440 < th dose dependent rect. 18 11
20 535.15 wind 7 43200 > th dose dependent rect. 10 5
22 536.25 temperature 25 1440 > th dose dependent rect. 16 3
25 536.77 temperature 25 1440 > th dose dependent rect. 6 14
28 537.12 radiation 1 1440 < th dose dependent rect. 18 7
32 537.31 wind 9 43200 < th dose independent rect. 10 5
50 537.92 radiation 1 1440 < th dose dependent rect. 18 9
51 537.93 wind 9 43200 > th dose independent rect. 10 5
72 538.75 wind 1 43200 < th dose dependent rect. 23 5
75 538.90 temperature 25 1440 > th dose dependent rect. 13 7
78 539.05 radiation 20 1440 < th dose dependent rect. 18 7
79 539.09 temperature 25 1440 > th dose dependent rect. 13 21
95 539.60 temperature 25 1440 > th dose dependent sin 21 NA
129 540.57 wind 7 43200 > th dose dependent rect. 12 2
132 540.61 radiation 20 1440 < th dose dependent rect. 18 9
206 542.38 radiation 1 1440 < th dose dependent rect. 18 1
215 542.53 radiation 30 14400 > th dose independent rect. 16 1
244 542.94 temperature 25 1440 > th dose dependent no NA NA
287 544.64 temperature 25 1440 > th dose dependent rect. 17 23
295 544.73 wind 7 43200 > th dose dependent rect. 12 4
359 547.17 temperature 30 1440 < th dose independent rect. 14 22
407 548.61 temperature 25 1440 > th dose dependent rect. 7 1
409 548.66 temperature 30 1440 < th dose independent rect. 18 22
438 549.87 radiation 1 1440 < th dose dependent rect. 18 23
458 550.48 temperature 30 1440 > th dose independent rect. 14 22
469 550.92 radiation 1 14400 < th dose dependent rect. 22 7
490 551.79 temperature 30 1440 < th dose independent rect. 9 7
508 552.44 temperature 30 1440 > th dose independent rect. 18 22
513 552.53 temperature 30 1440 < th dose independent rect. 9 23
518 552.68 temperature 30 1440 < th dose independent rect. 9 15
521 552.71 temperature 25 1440 > th dose dependent rect. 13 1
528 552.86 temperature 30 1440 < th dose independent rect. 9 10
532 552.94 temperature 30 1440 < th dose independent rect. 9 18
541 553.31 temperature 30 1440 < th dose independent rect. 2 14
551 553.47 temperature 30 1440 < th dose independent rect. 20 20
560 553.67 temperature 30 1440 < th dose independent rect. 2 22
566 553.74 temperature 30 1440 < th dose independent rect. 4 20
601 553.99 temperature 30 1440 < th dose independent no NA NA
603 554.00 temperature 30 1440 < th dose independent rect. 20 23
604 554.00 temperature 30 1440 < th dose independent rect. 22 23
615 554.05 temperature 30 1440 < th dose independent rect. 6 23
635 554.14 temperature 25 14400 > th dose independent rect. 4 11
661 554.29 temperature 30 1440 > th dose independent rect. 9 10
690 554.45 temperature 30 1440 < th dose independent sin 0 NA
693 554.47 temperature 25 4320 < th dose independent rect. 7 2
702 554.58 temperature 30 1440 > th dose independent rect. 9 7
714 554.77 temperature 30 1440 < th dose independent rect. 11 23
725 555.05 radiation 30 14400 > th dose dependent rect. 16 1
779 555.88 wind 3 43200 < th dose independent rect. 2 2
794 556.28 temperature 25 14400 < th dose independent rect. 4 12
797 556.34 temperature 30 1440 > th dose independent no NA NA
900 556.50 temperature 25 14400 > th dose independent sin 1 NA
901 556.52 wind 7 43200 > th dose independent rect. 4 11
902 556.52 temperature 30 1440 < th dose independent rect. 14 18
911 556.58 temperature 30 1440 < th dose independent rect. 14 10
937 556.81 temperature 30 1440 > th dose independent sin 23 NA
950 556.95 temperature 30 1440 < th dose independent rect. 14 13
967 556.97 temperature 30 1440 < th dose independent rect. 14 5
980 557.22 wind 7 43200 < th dose independent rect. 5 10