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Os08g0103000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amino acid-binding ACT domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.029) R2 : 0.284
β1 : -1.2 (0.106) R2dD : 0.208 R2D : 0.231
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.312 (0.0619) R2dN8 : 0.0535 R2N8 : 0.0767
σ : 0.544
deviance : 135.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.09 0.477 10.7 -1.08 0.691 -0.714 -1.81 0.89 0.369 10.1 11.19 69 -- --
104.76 0.477 10.7 -1.1 0.684 -0.704 -1 -- 0.357 10.2 11.05 65 -- --
110.57 0.49 10.7 -1.16 0.635 -0.674 -- 0.306 0.376 10.6 11.18 66 -- --
107.89 0.484 10.7 -1.07 0.801 -0.833 -- -- 0.358 10.9 10 66 -- --
120.05 0.51 10.7 -1.05 -- -0.525 -- 1.4 0.322 -- 10.02 849 -- --
121.72 0.517 10.7 -1.17 0.345 -- -1.73 -- 0.301 6.91 -- -- -- --
128.8 0.531 10.7 -1.21 0.361 -- -- -- 0.304 5.79 -- -- -- --
124.27 0.519 10.7 -1.09 -- -0.566 -- -- 0.357 -- 10.03 856 -- --
140.52 0.552 10.6 -- 0.897 -0.944 -- -- 0.506 11.3 10.01 66 -- --
135.56 0.544 10.7 -1.2 -- -- -- -- 0.312 -- -- -- -- --
167.4 0.605 10.7 -- 0.343 -- -- -- 0.438 5.95 -- -- -- --
155.2 0.58 10.7 -- -- -0.667 -- -- 0.526 -- 10.04 962 -- --
173.48 0.615 10.7 -- -- -- -- -- 0.445 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 96.33 humidity 80.0 10 > th dose independent sin 1 NA
4 96.89 humidity 70.0 10 > th dose dependent sin 1 NA
22 99.80 radiation 10.0 90 < th dose dependent rect. 5 9
27 100.14 humidity 80.0 10 < th dose independent sin 2 NA
29 100.39 radiation 20.0 90 < th dose dependent sin 2 NA
33 100.78 precipitation 0.1 4320 > th dose dependent rect. 16 1
40 101.00 humidity 70.0 1440 > th dose dependent rect. 11 1
45 101.05 humidity 80.0 10 > th dose independent rect. 5 10
47 101.11 precipitation 0.1 4320 > th dose dependent rect. 4 13
49 101.19 humidity 80.0 10 > th dose independent rect. 5 13
50 101.20 precipitation 0.1 4320 > th dose dependent rect. 7 10
54 101.28 precipitation 0.1 4320 < th dose independent rect. 16 1
55 101.28 precipitation 0.1 4320 < th dose dependent rect. 16 1
56 101.32 precipitation 0.1 4320 > th dose independent rect. 16 1
72 101.62 humidity 80.0 10 > th dose independent rect. 3 12
73 101.65 humidity 80.0 10 > th dose independent rect. 3 15
77 101.71 precipitation 0.1 4320 < th dose independent rect. 3 14
78 101.71 precipitation 0.1 4320 < th dose dependent rect. 3 14
93 101.82 precipitation 0.1 4320 > th dose independent rect. 3 14
95 101.84 precipitation 0.1 4320 < th dose independent rect. 7 10
97 101.84 precipitation 0.1 4320 < th dose dependent rect. 7 10
109 102.05 wind 3.0 14400 < th dose dependent rect. 23 2
116 102.17 precipitation 0.1 4320 > th dose independent rect. 7 10
118 102.17 precipitation 0.1 4320 > th dose dependent rect. 4 10
123 102.21 humidity 80.0 10 < th dose independent rect. 6 10
124 102.21 wind 3.0 14400 < th dose dependent rect. 23 4
133 102.33 precipitation 0.1 4320 < th dose independent rect. 11 6
134 102.33 precipitation 0.1 4320 < th dose dependent rect. 11 6
136 102.40 radiation 10.0 90 < th dose dependent rect. 5 5
146 102.45 humidity 80.0 270 < th dose independent rect. 7 3
162 102.59 humidity 80.0 270 > th dose independent rect. 1 13
168 102.61 precipitation 0.1 4320 > th dose independent rect. 11 6
176 102.72 wind 3.0 14400 < th dose dependent rect. 21 9
180 102.76 radiation 10.0 90 > th dose independent sin 2 NA
184 102.78 humidity 80.0 10 < th dose independent rect. 2 14
196 102.90 humidity 80.0 10 < th dose independent rect. 24 16
203 102.92 precipitation 0.1 4320 < th dose independent rect. 7 1
204 102.92 precipitation 0.1 4320 < th dose dependent rect. 7 1
207 102.93 humidity 80.0 10 < th dose independent rect. 7 7
211 102.94 precipitation 0.1 4320 > th dose dependent rect. 18 23
229 103.11 wind 3.0 14400 < th dose independent rect. 23 2
234 103.14 precipitation 0.1 4320 > th dose independent rect. 7 1
235 103.14 precipitation 0.1 4320 > th dose dependent rect. 7 1
242 103.17 radiation 20.0 90 < th dose dependent rect. 11 23
252 103.25 humidity 80.0 1440 < th dose independent rect. 8 6
258 103.28 humidity 90.0 10 < th dose dependent sin 4 NA
268 103.32 precipitation 0.1 4320 < th dose independent rect. 3 11
269 103.32 precipitation 0.1 4320 < th dose dependent rect. 3 11
271 103.33 precipitation 0.1 4320 > th dose dependent rect. 7 7
273 103.34 precipitation 0.1 4320 > th dose independent rect. 3 11
286 103.38 humidity 70.0 30 > th dose dependent rect. 5 15
290 103.42 radiation 10.0 90 < th dose dependent rect. 5 14
298 103.46 precipitation 0.1 4320 < th dose independent sin 2 NA
300 103.46 precipitation 0.1 4320 < th dose dependent sin 2 NA
304 103.50 humidity 80.0 10 > th dose independent rect. 5 7
315 103.55 wind 1.0 14400 > th dose independent rect. 21 9
316 103.56 precipitation 0.1 4320 > th dose independent sin 2 NA
342 103.67 wind 3.0 14400 > th dose independent rect. 23 2
354 103.69 precipitation 0.1 4320 > th dose dependent sin 4 NA
367 103.73 humidity 80.0 1440 < th dose independent rect. 11 1
369 103.73 humidity 70.0 270 > th dose dependent rect. 1 13
381 103.80 humidity 80.0 1440 > th dose independent rect. 8 6
386 103.81 humidity 80.0 1440 < th dose independent rect. 8 4
393 103.83 humidity 70.0 30 > th dose dependent rect. 5 10
395 103.84 wind 3.0 14400 > th dose independent rect. 22 4
417 103.92 precipitation 0.1 4320 > th dose dependent rect. 18 20
424 103.95 precipitation 0.1 4320 < th dose independent rect. 2 18
425 103.95 precipitation 0.1 4320 < th dose dependent rect. 2 18
427 103.96 precipitation 0.1 4320 > th dose independent rect. 2 18
436 103.98 humidity 80.0 1440 > th dose independent rect. 11 1
490 104.12 radiation 10.0 90 < th dose independent sin 2 NA
497 104.13 wind 1.0 14400 > th dose independent rect. 19 12
515 104.20 humidity 80.0 1440 > th dose independent rect. 8 4
517 104.20 radiation 10.0 90 > th dose independent rect. 17 23
519 104.22 humidity 80.0 1440 > th dose independent rect. 6 8
521 104.22 humidity 70.0 1440 > th dose dependent rect. 9 5
539 104.25 radiation 20.0 90 < th dose dependent rect. 5 16
575 104.35 precipitation 0.1 4320 < th dose independent rect. 7 7
576 104.35 precipitation 0.1 4320 < th dose dependent rect. 7 7
581 104.36 humidity 70.0 30 > th dose dependent rect. 3 17
586 104.38 radiation 10.0 90 > th dose independent rect. 6 10
603 104.39 humidity 80.0 10 > th dose independent rect. 3 9
628 104.45 humidity 90.0 1440 < th dose dependent rect. 2 11
635 104.47 radiation 10.0 90 > th dose independent rect. 15 23
639 104.48 humidity 80.0 1440 < th dose independent rect. 6 8
644 104.49 wind 1.0 14400 > th dose independent rect. 21 14
651 104.50 precipitation 0.1 4320 > th dose dependent rect. 3 7
689 104.58 precipitation 0.1 4320 > th dose independent rect. 7 7
692 104.58 humidity 90.0 1440 < th dose dependent rect. 11 1
696 104.59 wind 1.0 14400 > th dose dependent rect. 24 2
729 104.67 wind 1.0 14400 > th dose independent rect. 19 16
730 104.67 precipitation 0.1 4320 > th dose dependent rect. 2 18
759 104.73 wind 1.0 14400 < th dose independent rect. 19 12
771 104.75 wind 3.0 14400 < th dose dependent rect. 4 2
803 104.81 humidity 50.0 1440 > th dose dependent rect. 11 1
808 104.82 humidity 80.0 10 > th dose independent rect. 5 5
812 104.84 humidity 80.0 270 > th dose independent rect. 1 9
824 104.85 humidity 70.0 270 > th dose dependent rect. 24 20
831 104.88 wind 1.0 14400 > th dose independent sin 10 NA
843 104.89 humidity 90.0 1440 < th dose dependent rect. 9 3
846 104.89 precipitation 0.1 4320 > th dose dependent rect. 4 5
940 104.99 humidity 50.0 1440 > th dose dependent rect. 2 12
961 105.02 humidity 90.0 10 < th dose dependent rect. 7 9
1000 105.06 wind 1.0 14400 > th dose dependent rect. 22 6