BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0103000 Os08g0103000|AK067246
(190 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38470.1 | chr4:17999432-18003551 FORWARD LENGTH=576 95 3e-20
AT2G17700.1 | chr2:7685778-7689278 REVERSE LENGTH=547 94 6e-20
AT4G35780.1 | chr4:16946729-16950405 REVERSE LENGTH=571 93 7e-20
AT1G08720.1 | chr1:2774089-2779077 FORWARD LENGTH=934 51 3e-07
AT1G73660.1 | chr1:27692247-27696718 REVERSE LENGTH=1031 49 1e-06
AT5G03730.2 | chr5:974958-979660 REVERSE LENGTH=822 48 2e-06
AT4G23050.2 | chr4:12080112-12083708 FORWARD LENGTH=737 48 3e-06
AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881 47 4e-06
>AT4G38470.1 | chr4:17999432-18003551 FORWARD LENGTH=576
Length = 575
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 85/170 (50%), Gaps = 9/170 (5%)
Query: 30 TKLIHEIIFSSXXXXXXXXXXXXXXXXXXXNIREAHVYSTTDGFCLDVFVVDGWDTEETD 89
++ +HEI FS+ NI+EAH +STTDG+ LDVFVVDGW EET+
Sbjct: 173 SRPLHEITFSTEDKPKLLFQLTALLAELGLNIQEAHAFSTTDGYSLDVFVVDGWPYEETE 232
Query: 90 DLIIKI-KEALSHKXXXXXXXXXXXXXXXQ---QKIAELQQQVGDS-----EIDWNLLTT 140
L I + KEA + + Q A + + EI+ L
Sbjct: 233 RLRISLEKEAAKIELQSQSWPMQQSFSPEKENGQTGARTHVPIPNDGTDVWEINLKHLKF 292
Query: 141 GEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILILRQC 190
G KIA+GS DLY+GTY +VA+K+L+ ++ E EF QE+ I+R+
Sbjct: 293 GHKIASGSYGDLYKGTYCSQEVAIKVLKPERLDSDLEKEFAQEVFIMRKV 342
>AT2G17700.1 | chr2:7685778-7689278 REVERSE LENGTH=547
Length = 546
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 30 TKLIHEIIFSSXXXXXXXXXXXXXXXXXXXNIREAHVYSTTDGFCLDVFVVDGWDTEETD 89
T+ +HEI FS+ NI+EAH +ST DGF LDVFVVDGW EETD
Sbjct: 169 TRPMHEITFSTIDKPKLLSQLTSLLGELGLNIQEAHAFSTVDGFSLDVFVVDGWSQEETD 228
Query: 90 DL-------IIKIK-EALSHKXXXXXXXXXXXXXXXQQKIAELQQQVGDS-EIDWNLLTT 140
L I+K+K + S + E+ D EID L
Sbjct: 229 GLRDALSKEILKLKDQPGSKQKSISFFEHDKSSNELIPACIEIPTDGTDEWEIDVTQLKI 288
Query: 141 GEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILILRQ 189
+K+A+GS DL+RGTY +VA+K L+ NN EF QE+ I+R+
Sbjct: 289 EKKVASGSYGDLHRGTYCSQEVAIKFLKPDRVNNEMLREFSQEVFIMRK 337
>AT4G35780.1 | chr4:16946729-16950405 REVERSE LENGTH=571
Length = 570
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 85/177 (48%), Gaps = 9/177 (5%)
Query: 22 SISSRYPKTKLIHEIIFSSXXXXXXXXXXXXXXXXXXXNIREAHVYSTTDGFCLDVFVVD 81
+++++ P ++ +HEI FS+ NI+EAH +ST DGF LDVFVVD
Sbjct: 167 AVNAQLPNSRPMHEITFSTIDRPKLLSQLTSMLGELGLNIQEAHAFSTADGFSLDVFVVD 226
Query: 82 GWDTEETDDL-------IIKIK-EALSHKXXXXXXXXXXXXXXXQQKIAELQQQVGDS-E 132
GW EET+ L I K K + S + E+ D E
Sbjct: 227 GWSQEETEGLKDALKKEIRKFKDQPCSKQKSITFFEHDKSTNELLPACVEIPTDGTDEWE 286
Query: 133 IDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILILRQ 189
ID L +K+A GS +L+RGTY +VA+KIL+ N EF QE+ I+R+
Sbjct: 287 IDMKQLKIEKKVACGSYGELFRGTYCSQEVAIKILKPERVNAEMLREFSQEVYIMRK 343
>AT1G08720.1 | chr1:2774089-2779077 FORWARD LENGTH=934
Length = 933
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 128 VGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILIL 187
VG+ EI WN L E+I GS ++Y ++G +VAVK D F+ + EF E+ I+
Sbjct: 659 VGECEIPWNDLVIAERIGLGSYGEVYHADWHGTEVAVKKFLDQDFSGAALAEFRSEVRIM 718
Query: 188 RQ 189
R+
Sbjct: 719 RR 720
>AT1G73660.1 | chr1:27692247-27696718 REVERSE LENGTH=1031
Length = 1030
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 128 VGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILIL 187
V D EI W +T GE+I GS ++YRG ++G +VAVK D + EF E+ I+
Sbjct: 738 VSDCEILWEEITVGERIGLGSYGEVYRGDWHGTEVAVKKFLDQDLTGEALEEFRSEVRIM 797
Query: 188 RQ 189
++
Sbjct: 798 KK 799
>AT5G03730.2 | chr5:974958-979660 REVERSE LENGTH=822
Length = 821
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 123 ELQQQVGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQ 182
EL D +I W L EKI GS ++R ++G DVAVKIL + F+ EFL+
Sbjct: 536 ELGLDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLR 595
Query: 183 EILILRQ 189
E+ I+++
Sbjct: 596 EVAIMKR 602
>AT4G23050.2 | chr4:12080112-12083708 FORWARD LENGTH=737
Length = 736
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 132 EIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEVEFLQEILILRQ 189
EI W L GE++ GS A ++RG +NG DVA+K+ D +N + E +EI I+++
Sbjct: 462 EIRWEDLQLGEEVGRGSFAAVHRGVWNGSDVAIKVYFDGDYNAMTLTECKKEINIMKK 519
>AT5G11850.1 | chr5:3816632-3821024 REVERSE LENGTH=881
Length = 880
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 119 QKIAELQQQVGDSEIDWNLLTTGEKIATGSSADLYRGTYNGLDVAVKILRDSHFNNPSEV 178
Q I L + EI W L GE+I GS ++YR +NG +VAVK D F+ +
Sbjct: 590 QGINPLLGEAAKWEIMWEDLQIGERIGIGSYGEVYRAEWNGTEVAVKKFLDQDFSGDALT 649
Query: 179 EFLQEILIL 187
+F EI I+
Sbjct: 650 QFKSEIEIM 658
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.133 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,332,130
Number of extensions: 102190
Number of successful extensions: 364
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 8
Length of query: 190
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 97
Effective length of database: 8,556,881
Effective search space: 830017457
Effective search space used: 830017457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)