BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0102800 Os08g0102800|AK120363
         (156 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0102800  Conserved hypothetical protein                      304   2e-83
Os07g0189700  Conserved hypothetical protein                      107   3e-24
Os07g0189800  Conserved hypothetical protein                      103   5e-23
Os07g0475000  Conserved hypothetical protein                       84   6e-17
Os03g0850800  Conserved hypothetical protein                       71   3e-13

>Os08g0102800 Conserved hypothetical protein
          Length = 156

 Score =  304 bits (778), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 149/156 (95%), Positives = 149/156 (95%)

Query: 1   MAPTLPSWWXXXXXXXGVGATAAARGSKKLTPPVSTAYEWPERFHAVVVSINLTNHDRGG 60
           MAPTLPSWW       GVGATAAARGSKKLTPPVSTAYEWPERFHAVVVSINLTNHDRGG
Sbjct: 1   MAPTLPSWWLLFLLLLGVGATAAARGSKKLTPPVSTAYEWPERFHAVVVSINLTNHDRGG 60

Query: 61  GRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNGTSYLFDTAASSCRTFQFPVGI 120
           GRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNGTSYLFDTAASSCRTFQFPVGI
Sbjct: 61  GRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNGTSYLFDTAASSCRTFQFPVGI 120

Query: 121 LPRSGVTPWTPTSPLAAPSAGYSTAIRGMCSCSKPV 156
           LPRSGVTPWTPTSPLAAPSAGYSTAIRGMCSCSKPV
Sbjct: 121 LPRSGVTPWTPTSPLAAPSAGYSTAIRGMCSCSKPV 156



>Os07g0189700 Conserved hypothetical protein
          Length = 225

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 64/83 (77%), Gaps = 7/83 (8%)

Query: 40  WPERFHAVVVSINLTNHDRGGGRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNG 99
           WPE+FHAVV     TN    GGRLQLI++YYDWP GR+LN++R QLSGDP  Y+VEW NG
Sbjct: 27  WPEQFHAVV----FTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGDPT-YDVEWTNG 81

Query: 100 TSYLFDTAASSCRTFQFPVGILP 122
           TSY F+  A+SCRT  FPVG+LP
Sbjct: 82  TSYFFN--ATSCRTKLFPVGLLP 102



>Os07g0189800 Conserved hypothetical protein
          Length = 226

 Score =  103 bits (257), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 64/81 (79%), Gaps = 5/81 (6%)

Query: 42  ERFHAVVVSINLTNHDRGGGRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNGTS 101
           ERFHAV+ + NLT    GGG+LQ+ ++YYDWP GR+LN+V  QLSGD P+Y+VEW NGTS
Sbjct: 36  ERFHAVLFT-NLT-QTSGGGKLQMTDLYYDWPGGRNLNLVAGQLSGD-PVYDVEWTNGTS 92

Query: 102 YLFDTAASSCRTFQFPVGILP 122
           Y FD+A  SCRT  FPVGILP
Sbjct: 93  YYFDSA--SCRTLLFPVGILP 111



>Os07g0475000 Conserved hypothetical protein
          Length = 246

 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 62/93 (66%), Gaps = 6/93 (6%)

Query: 32  PPVSTAYEWPERFHAVVVSINLTNHDRG--GGRLQLIEIYYDWPHGRDLNIVRDQLSG-D 88
           PP      WP+ FHA + + NLTNH     G  L++ ++YYDW   R+LN++R QL+  D
Sbjct: 26  PPEPKPARWPDVFHARLFT-NLTNHSAASTGPPLRVADLYYDWSRRRNLNLIRYQLAAAD 84

Query: 89  PPLYNVEWVNGTSYLFDTAASSCRTFQFPVGIL 121
            PLY+VEW NGT++ FD+   SCRT +FPVG+L
Sbjct: 85  DPLYDVEWDNGTTFYFDS--RSCRTERFPVGVL 115



>Os03g0850800 Conserved hypothetical protein
          Length = 214

 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 46/68 (67%)

Query: 61  GRLQLIEIYYDWPHGRDLNIVRDQLSGDPPLYNVEWVNGTSYLFDTAASSCRTFQFPVGI 120
           G L L +++YDWP GR+L+++R QL+ D P Y+ EW NGTS+ +  A  +CR+    VGI
Sbjct: 46  GNLSLADLWYDWPGGRNLHVIRYQLAADEPFYDNEWNNGTSFFYTPARRACRSAAVGVGI 105

Query: 121 LPRSGVTP 128
           LP + + P
Sbjct: 106 LPPNWLVP 113



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,405,390
Number of extensions: 279590
Number of successful extensions: 659
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 5
Length of query: 156
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 64
Effective length of database: 12,232,113
Effective search space: 782855232
Effective search space used: 782855232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)