BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0684900 Os07g0684900|AK073232
(262 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0684900 Homeodomain-like containing protein 329 1e-90
Os03g0325600 Homeodomain-like containing protein 126 2e-29
Os08g0242400 Similar to WUSCHEL-related homeobox 8 118 4e-27
Os05g0564500 Homeodomain-like containing protein 94 9e-20
Os07g0533100 89 2e-18
>Os07g0684900 Homeodomain-like containing protein
Length = 262
Score = 329 bits (843), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/262 (66%), Positives = 175/262 (66%)
Query: 1 MDGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFG 60
MDGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFG
Sbjct: 1 MDGGHSPDRHAAAAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFG 60
Query: 61 AVGDANVFYWFQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGSPASS 120
AVGDANVFYWFQN HAGSPASS
Sbjct: 61 AVGDANVFYWFQNRRSRSRRRQRQLQAQAQAAAAAASSGSPPTASSGGLAPGHAGSPASS 120
Query: 121 LGMFAHGAAGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFAISRQMGYMDXXXXXXX 180
LGMFAHGAAGY LFAISRQMGYMD
Sbjct: 121 LGMFAHGAAGYSSSSSSSWPSSPPSVGMMMGDVDYGGGGDDLFAISRQMGYMDGGGGSSS 180
Query: 181 XXXXXXXXXXXLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPAN 240
LYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPAN
Sbjct: 181 SAAAGQHQQQQLYYSCQPATMTVFINGVATEVPRGPIDLRSMFGQDVMLVHSTGALLPAN 240
Query: 241 EYGILLHSLQMGESYFLVTRSS 262
EYGILLHSLQMGESYFLVTRSS
Sbjct: 241 EYGILLHSLQMGESYFLVTRSS 262
>Os03g0325600 Homeodomain-like containing protein
Length = 328
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/57 (100%), Positives = 57/57 (100%)
Query: 17 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN
Sbjct: 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 93
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 73/105 (69%), Gaps = 6/105 (5%)
Query: 162 LFAISRQMGYMDX----XXXXXXXXXXXXXXXXXLYYSCQ--PATMTVFINGVATEVPRG 215
LFAISRQMG++ +YSCQ AT+TVFINGV E+PRG
Sbjct: 222 LFAISRQMGFVGSPRCSPASSPATPSSAATAAQQQFYSCQLPAATITVFINGVPMEMPRG 281
Query: 216 PIDLRSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLVTR 260
PIDLR+MFGQDVMLVHSTGALLP N+YGIL+ SLQ+GESYFLV R
Sbjct: 282 PIDLRAMFGQDVMLVHSTGALLPVNDYGILMQSLQIGESYFLVAR 326
>Os08g0242400 Similar to WUSCHEL-related homeobox 8
Length = 284
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 52/61 (85%), Positives = 54/61 (88%)
Query: 13 AAAGEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQ 72
+ GEP RSRW PKPEQILILESIFNSGMVNP KDET RIR+LLERFGAV DANVFYWFQ
Sbjct: 34 SGGGEPARSRWAPKPEQILILESIFNSGMVNPAKDETARIRRLLERFGAVRDANVFYWFQ 93
Query: 73 N 73
N
Sbjct: 94 N 94
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 64/102 (62%), Gaps = 3/102 (2%)
Query: 162 LFAISRQMGYMDXXXXXXXXXXXXXXXXXXLYYSCQPA-TMTVFINGVATEVPRG-PIDL 219
LFAISRQMG M S QP T+ VFINGVA +VP G +D+
Sbjct: 183 LFAISRQMGLM-ARHGGGDHHYSSYADSDATQLSYQPTGTIQVFINGVAYDVPSGGALDM 241
Query: 220 RSMFGQDVMLVHSTGALLPANEYGILLHSLQMGESYFLVTRS 261
FG+D MLVHS+G +LP +E+G+L++SLQMGE Y+LV++S
Sbjct: 242 AGTFGRDAMLVHSSGEVLPVDEHGVLINSLQMGECYYLVSKS 283
>Os05g0564500 Homeodomain-like containing protein
Length = 476
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 39/54 (72%), Positives = 44/54 (81%)
Query: 20 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+ RW P+PEQI ILE IFNSGMVNPP+DE RIR L+ +G VGDANVFYWFQN
Sbjct: 70 KPRWNPRPEQIRILEGIFNSGMVNPPRDEIRRIRLQLQEYGQVGDANVFYWFQN 123
>Os07g0533100
Length = 306
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 44/54 (81%)
Query: 20 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQN 73
+ R P+PEQI ILE+IFNSGMVNPP+DE RIR L+ +G VGDANVFYWFQN
Sbjct: 134 KPRRNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQN 187
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,316,146
Number of extensions: 198086
Number of successful extensions: 535
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 8
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)