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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0242400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WUSCHEL-related homeobox 8.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0307) R2 : 0.218
β1 : -0.0966 (0.112) R2dD : 0.00129 R2D : -0.000503
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.35 (0.248) R2dE : 0.0518 R2E : 0.0706
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.78 (0.874) R2dD*E : 0.138 R2D*E : 0.157
γ1 : -0.136 (0.0656) R2dN8 : 0.00995 R2N8 : 0.00573
σ : 0.574
deviance : 152.07
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.22
memory length : 76
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.4
open length of G : 1.4

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
152.29 0.58 2.88 -0.121 0.108 1.21 -0.136 -7.73 -0.163 17.7 91 80 2.19 1.61
176.91 0.619 2.89 -0.0932 0.084 1.64 0.643 -- -0.148 17 90.6 82 2.37 1.38
151.7 0.574 2.88 -0.102 0.104 1.35 -- -7.71 -0.147 18 90.56 80 2.35 1.45
177.82 0.621 2.89 -0.0969 0.0966 1.65 -- -- -0.147 18 90.67 83 2.38 1.38
152.07 0.574 2.88 -0.0966 -- 1.35 -- -7.78 -0.136 -- 90.22 76 2.4 1.4
191.25 0.648 2.89 -0.132 0.0555 -- -0.749 -- -0.139 4.16 -- -- -- --
192.65 0.65 2.88 -0.124 0.0722 -- -- -- -0.135 0.811 -- -- -- --
178.25 0.622 2.89 -0.101 -- 1.62 -- -- -0.145 -- 90.22 79 2.42 1.37
178.07 0.622 2.89 -- 0.097 1.65 -- -- -0.138 18.2 90.7 83 2.38 1.37
192.97 0.649 2.88 -0.122 -- -- -- -- -0.134 -- -- -- -- --
193.05 0.65 2.88 -- 0.0703 -- -- -- -0.121 0.731 -- -- -- --
178.48 0.622 2.88 -- -- 1.62 -- -- -0.133 -- 90.77 80 2.41 1.34
193.36 0.649 2.88 -- -- -- -- -- -0.12 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 157.33 atmosphere 1005.0 30 > th dose dependent rect. 3 1
3 161.36 humidity 90.0 90 < th dose independent rect. 2 1
4 161.40 humidity 90.0 90 < th dose independent rect. 2 3
8 166.14 atmosphere 1005.0 90 > th dose independent rect. 2 2
9 167.13 atmosphere 1005.0 10 > th dose independent rect. 3 1
11 168.00 humidity 90.0 90 < th dose dependent rect. 2 1
16 168.77 humidity 90.0 90 < th dose dependent rect. 2 3
18 168.86 temperature 20.0 10 < th dose independent rect. 4 1
36 170.50 humidity 90.0 10 < th dose independent rect. 3 1
95 174.43 temperature 25.0 10 < th dose dependent rect. 2 2
108 175.15 wind 1.0 90 > th dose independent rect. 2 2
109 175.20 wind 1.0 10 > th dose independent rect. 2 2
115 175.44 temperature 20.0 10 < th dose independent rect. 2 3
145 176.91 wind 3.0 30 < th dose independent rect. 2 2
157 177.24 radiation 20.0 30 > th dose independent rect. 15 1
215 177.76 radiation 10.0 10 > th dose dependent rect. 16 1
216 177.79 precipitation 0.1 90 < th dose independent rect. 2 2
217 177.79 precipitation 0.1 90 < th dose dependent rect. 2 2
220 177.89 precipitation 0.1 10 < th dose independent rect. 2 3
221 177.89 precipitation 0.1 10 < th dose dependent rect. 2 3
222 177.93 precipitation 0.1 90 < th dose independent rect. 4 22
223 177.93 precipitation 0.1 90 < th dose dependent rect. 4 22
225 177.97 atmosphere 1000.0 90 > th dose independent rect. 4 22
263 178.18 temperature 25.0 90 < th dose independent rect. 2 1
265 178.18 temperature 10.0 90 > th dose independent rect. 2 2
268 178.18 humidity 50.0 90 > th dose independent rect. 2 2
271 178.18 atmosphere 995.0 90 > th dose independent rect. 2 2
272 178.18 atmosphere 1010.0 90 < th dose independent rect. 2 2
274 178.18 radiation 1.0 90 < th dose independent rect. 2 2
281 178.18 temperature 10.0 90 > th dose independent rect. 4 22
282 178.18 radiation 1.0 90 < th dose dependent rect. 2 2
304 178.50 precipitation 0.1 10 < th dose independent rect. 5 21
305 178.50 precipitation 0.1 10 < th dose dependent rect. 5 21
321 178.65 atmosphere 995.0 10 > th dose independent rect. 5 21
341 178.67 radiation 1.0 10 < th dose dependent rect. 2 3
342 178.69 wind 9.0 1440 < th dose independent rect. 3 2
343 178.69 temperature 10.0 1440 > th dose independent rect. 3 2
346 178.69 temperature 30.0 1440 < th dose independent rect. 3 2
350 178.69 humidity 50.0 1440 > th dose independent rect. 3 2
359 178.69 atmosphere 995.0 1440 > th dose independent rect. 3 2
360 178.69 radiation 20.0 1440 < th dose independent rect. 3 2
373 178.69 temperature 10.0 1440 > th dose independent rect. 5 22
377 178.71 humidity 80.0 10 > th dose independent rect. 2 3
386 178.75 temperature 10.0 10 > th dose independent rect. 2 3
392 178.75 humidity 50.0 10 > th dose independent rect. 2 3
398 178.75 atmosphere 995.0 10 > th dose independent rect. 2 3
400 178.75 atmosphere 1010.0 10 < th dose independent rect. 2 3
404 178.75 radiation 1.0 10 < th dose independent rect. 2 3
414 178.75 temperature 10.0 10 > th dose independent rect. 5 21
443 178.77 temperature 30.0 90 < th dose independent rect. 4 22
562 179.03 wind 9.0 90 < th dose dependent rect. 2 2
620 179.32 wind 9.0 90 < th dose independent rect. 4 22
628 179.52 wind 9.0 30 < th dose dependent rect. 15 14
736 179.95 radiation 20.0 90 < th dose dependent rect. 4 22
741 179.98 wind 1.0 90 > th dose independent rect. 4 22
793 180.16 atmosphere 995.0 90 > th dose dependent rect. 4 22
859 180.34 atmosphere 1015.0 1440 < th dose independent rect. 4 1
922 180.48 wind 3.0 30 < th dose independent rect. 15 14
947 180.51 atmosphere 1005.0 90 < th dose dependent rect. 10 6
960 180.70 wind 7.0 90 < th dose independent rect. 14 14
973 180.77 radiation 20.0 10 < th dose dependent rect. 12 14
995 180.79 radiation 20.0 10 < th dose dependent rect. 14 12
997 180.82 temperature 10.0 90 > th dose dependent rect. 2 2