BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0680500 Os07g0680500|AK070164
(184 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0680500 Helicase, C-terminal domain containing protein 350 3e-97
Os04g0177300 DEAD/DEAH box helicase, N-terminal domain cont... 85 2e-17
Os08g0180300 DEAD/DEAH box helicase, N-terminal domain cont... 80 1e-15
Os02g0527100 DEAD/DEAH box helicase, N-terminal domain cont... 79 1e-15
Os04g0629300 DEAD/DEAH box helicase, N-terminal domain cont... 78 4e-15
Os07g0511500 SNF2-related domain containing protein 77 5e-15
Os01g0779400 SWAP/Surp domain containing protein 74 4e-14
>Os07g0680500 Helicase, C-terminal domain containing protein
Length = 184
Score = 350 bits (898), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/184 (93%), Positives = 172/184 (93%)
Query: 1 MKGGRKSQTALAQFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVIL 60
MKGGRKSQTALAQFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVIL
Sbjct: 1 MKGGRKSQTALAQFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVIL 60
Query: 61 VEPLLNPAAEAQAISRIHRVGQDKSTFIHRFIVKNTIEESIYKLNRGRAVCSTIHRKSKN 120
VEPLLNPAAEAQAISRIHRVGQDKSTFIHRFIVKNTIEESIYKLNRGRAVCSTIHRKSKN
Sbjct: 61 VEPLLNPAAEAQAISRIHRVGQDKSTFIHRFIVKNTIEESIYKLNRGRAVCSTIHRKSKN 120
Query: 121 FKDELVLTLKDIESLFPVATLDQPSEQENKNYGGAGGHMRSLPPSVXXXXXXXXXXXXQH 180
FKDELVLTLKDIESLFPVATLDQPSEQENKNYGGAGGHMRSLPPSV QH
Sbjct: 121 FKDELVLTLKDIESLFPVATLDQPSEQENKNYGGAGGHMRSLPPSVAAGLAAERRLLEQH 180
Query: 181 DNQH 184
DNQH
Sbjct: 181 DNQH 184
>Os04g0177300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 664
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 59/92 (64%)
Query: 13 QFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVILVEPLLNPAAEAQ 72
+F G S EK K FS+ + VLLM ++ G GLNL A +V L++P NPA E Q
Sbjct: 543 RFDGKLSQKHREKVLKEFSESKDKLVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQ 602
Query: 73 AISRIHRVGQDKSTFIHRFIVKNTIEESIYKL 104
AI RIHR+GQ ++ + RFIVK+T+EE + K+
Sbjct: 603 AIMRIHRIGQKRAVQVRRFIVKDTVEERMQKV 634
>Os08g0180300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1030
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 13 QFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVILVEPLLNPAAEAQ 72
+ G S S +KA K F+ +V++M ++ G GLN++ A HVIL++ NP AE Q
Sbjct: 904 RLDGTMSLNSRDKAVKDFNTDPEVRVMIMSLKAGNLGLNMVAACHVILLDLWWNPYAEDQ 963
Query: 73 AISRIHRVGQDKSTFIHRFIVKNTIEESIYKL-NRGRAVCSTIHRKSKNFKDELVLTLKD 131
AI R HR+GQ + + R +K+T+E+ I L RA+ S+ + K+ LT+ D
Sbjct: 964 AIDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEEKRAMVSSAFGEDKSGGHATRLTVDD 1023
Query: 132 IESLF 136
++ LF
Sbjct: 1024 LKYLF 1028
>Os02g0527100 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 810
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%)
Query: 10 ALAQFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVILVEPLLNPAA 69
+ A+ G + EK K FS+ + VLLM ++ G G+NL A + +++P NPA
Sbjct: 686 SFARLDGTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAV 745
Query: 70 EAQAISRIHRVGQDKSTFIHRFIVKNTIEESI 101
E QAI RIHR+GQ KS I RFIVK T+EE +
Sbjct: 746 EEQAIMRIHRIGQTKSVSIKRFIVKGTVEERM 777
>Os04g0629300 DEAD/DEAH box helicase, N-terminal domain containing protein
Length = 1051
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 1/114 (0%)
Query: 24 EKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVILVEPLLNPAAEAQAISRIHRVGQD 83
E A + F+ +V+LM ++ G GLN++ A HVI+++P NP AE QA+ R HR+GQ
Sbjct: 936 EAAVREFNTDPEVRVMLMSLKAGNLGLNMVAACHVIMIDPWWNPYAEDQAVDRAHRIGQT 995
Query: 84 KSTFIHRFIVKNTIEESIYKL-NRGRAVCSTIHRKSKNFKDELVLTLKDIESLF 136
+ + R +K+T+E+ I L + R + + + K LT+ D++ LF
Sbjct: 996 RPVTVSRLTIKDTVEDRILALQEKKRKMVQSAFGEDKPGGSATRLTIDDLQYLF 1049
>Os07g0511500 SNF2-related domain containing protein
Length = 635
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 57/100 (57%)
Query: 5 RKSQTALAQFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVILVEPL 64
+KS Q G + + KA +F+ ++ LM ++ G LNL A HV L++P
Sbjct: 503 QKSGIKCVQLNGKMNIVEKGKAIDTFTNDPDCRIFLMSLKAGGVALNLTVASHVFLMDPW 562
Query: 65 LNPAAEAQAISRIHRVGQDKSTFIHRFIVKNTIEESIYKL 104
NPA E+QA RIHR+GQ K RF++K+T+EE I +L
Sbjct: 563 WNPAVESQAQDRIHRIGQFKPIRSMRFVIKDTVEERILQL 602
>Os01g0779400 SWAP/Surp domain containing protein
Length = 1213
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 1/135 (0%)
Query: 5 RKSQTALAQFKGLASSISGEKAKKSFSKMQPAQVLLMLIQHGANGLNLLEAQHVILVEPL 64
+ S + + G S + ++A K F+ V++M ++ + GLN++ A HV+L++
Sbjct: 1079 KSSHLSYRRLDGTMSVAARDRAVKDFNTNPEVSVMIMSLKAASLGLNMVAACHVLLLDLW 1138
Query: 65 LNPAAEAQAISRIHRVGQDKSTFIHRFIVKNTIEESIYKL-NRGRAVCSTIHRKSKNFKD 123
NP E QA+ R HR+GQ + + R +K+T+E+ I L + R + ++ + K+
Sbjct: 1139 WNPTTEDQAVDRAHRIGQTRPVTVSRLTIKDTVEDRILALQEKKREMVASAFGEDKSGAH 1198
Query: 124 ELVLTLKDIESLFPV 138
+ LT++D+ LF V
Sbjct: 1199 QTRLTVEDLNYLFMV 1213
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,701,703
Number of extensions: 204685
Number of successful extensions: 612
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 612
Number of HSP's successfully gapped: 7
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)