Os07g0680500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helicase, C-terminal domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os07g0680500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Helicase, C-terminal domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.39 | 0.291 | 11.3 | 0.115 | 1.13 | 0.965 | 0.227 | 0.557 | 0.374 | 17.2 | 21.48 | 1389 | -- | -- |
| 38.36 | 0.288 | 11.3 | -0.000371 | 1.14 | 0.88 | 0.268 | -- | 0.356 | 17.2 | 21.8 | 1386 | -- | -- |
| 38.16 | 0.288 | 11.3 | 0.102 | 1.13 | 0.918 | -- | 0.403 | 0.363 | 17.2 | 21.79 | 1400 | -- | -- |
| 38.42 | 0.289 | 11.3 | 0.00611 | 1.14 | 0.883 | -- | -- | 0.334 | 17.2 | 21.88 | 1380 | -- | -- |
| 93.21 | 0.45 | 11.2 | 0.247 | -- | 0.875 | -- | 0.461 | 0.389 | -- | 21.72 | 449 | -- | -- |
| 63.97 | 0.375 | 11.2 | 0.351 | 1.1 | -- | 0.288 | -- | 0.606 | 17.3 | -- | -- | -- | -- |
| 64.17 | 0.375 | 11.2 | 0.351 | 1.11 | -- | -- | -- | 0.607 | 17.3 | -- | -- | -- | -- |
| 67.17 | 0.382 | 11.3 | 0.191 | -- | 0.984 | -- | -- | 0.437 | -- | 25.83 | 328 | -- | -- |
| 38.42 | 0.289 | 11.3 | -- | 1.14 | 0.885 | -- | -- | 0.332 | 17.2 | 21.87 | 1380 | -- | -- |
| 127.88 | 0.528 | 11.2 | 0.313 | -- | -- | -- | -- | 0.58 | -- | -- | -- | -- | -- |
| 67.42 | 0.384 | 11.2 | -- | 1.1 | -- | -- | -- | 0.568 | 17.3 | -- | -- | -- | -- |
| 64.26 | 0.373 | 11.3 | -- | -- | 0.954 | -- | -- | 0.242 | -- | 25.78 | 314 | -- | -- |
| 130.47 | 0.533 | 11.2 | -- | -- | -- | -- | -- | 0.545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 38.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 5 | 38.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 9 | 38.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 11 | 39.07 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 18 | 39.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 21 | 39.38 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 22 | 39.39 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 23 | 39.39 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 24 | 39.40 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 26 | 39.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 29 | 39.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 30 | 39.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 47 | 39.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 49 | 39.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 61 | 39.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 63 | 39.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 77 | 39.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 19 |
| 78 | 39.88 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 111 | 40.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 117 | 40.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 19 |
| 145 | 40.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 148 | 40.16 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 204 | 40.29 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 265 | 40.42 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 277 | 40.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 282 | 40.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 302 | 40.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 347 | 40.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 377 | 40.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 417 | 40.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 442 | 41.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 498 | 41.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 502 | 41.28 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 551 | 41.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 556 | 41.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 590 | 41.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 690 | 41.69 | temperature | 15 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 731 | 41.81 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 799 | 41.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 901 | 42.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |