BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0679300 Os07g0679300|AK099229
(425 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0679300 Similar to Alpha-galactosidase precursor (EC 3... 825 0.0
Os10g0493600 Alpha-galactosidase precursor (EC 3.2.1.22) (M... 481 e-136
AK067532 189 3e-48
Os01g0518500 Glycoside hydrolase, family 27 protein 89 6e-18
>Os07g0679300 Similar to Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase)
(Alpha-D- galactoside galactohydrolase)
Length = 425
Score = 825 bits (2130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 30 MRIEPLPTAALRRLYDTSNYGKLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALV 89
MRIEPLPTAALRRLYDTSNYGKLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALV
Sbjct: 30 MRIEPLPTAALRRLYDTSNYGKLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALV 89
Query: 90 STGLADLGYNYVNIDDCWSNVKRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDA 149
STGLADLGYNYVNIDDCWSNVKRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDA
Sbjct: 90 STGLADLGYNYVNIDDCWSNVKRGKKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDA 149
Query: 150 GIFTCQVRPGSLHHEKDDAAIFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQI 209
GIFTCQVRPGSLHHEKDDAAIFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQI
Sbjct: 150 GIFTCQVRPGSLHHEKDDAAIFASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQI 209
Query: 210 FYSLCEWGQDDPALWAGKVGNSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDM 269
FYSLCEWGQDDPALWAGKVGNSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDM
Sbjct: 210 FYSLCEWGQDDPALWAGKVGNSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDM 269
Query: 270 LEVGNGGMTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQ 329
LEVGNGGMTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQ
Sbjct: 270 LEVGNGGMTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQ 329
Query: 330 GRRILGQGKNGCQEVWAGPLSGNRLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLW 389
GRRILGQGKNGCQEVWAGPLSGNRLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLW
Sbjct: 330 GRRILGQGKNGCQEVWAGPLSGNRLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLW 389
Query: 390 KHETLSENVVGTFGAQVDVHDCKMYIFTPAVTVASS 425
KHETLSENVVGTFGAQVDVHDCKMYIFTPAVTVASS
Sbjct: 390 KHETLSENVVGTFGAQVDVHDCKMYIFTPAVTVASS 425
>Os10g0493600 Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D-
galactoside galactohydrolase)
Length = 417
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 231/366 (63%), Positives = 272/366 (74%), Gaps = 6/366 (1%)
Query: 54 LNNGLALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADLGYNYVNIDDCWSNVKRG 113
NGL TPQMGWNSWN F C INE +IR+TADALV+TGLA LGY YVNIDDCW+ R
Sbjct: 56 FENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRD 115
Query: 114 KKDQLLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTCQVR-PGSLHHEKDDAAIFA 172
+ +P+ +TFPSGIK LADYVH KGLKLGIYSDAG TC + PGSL HE+ D FA
Sbjct: 116 SQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFA 175
Query: 173 SWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQDDPALWAGKVGNSW 232
SWGVDYLKYDNC + G +RY M +A+ + G+ IF+SLCEWG+++PA WAG++GNSW
Sbjct: 176 SWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSW 235
Query: 233 RTTDDIQDTWKSMTDIADKNNKWASYAGPGGWNDPDMLEVGNGGMTFAEYRAHFSIWALM 292
RTT DI D W SMT AD+N++WA+YAGPGGWNDPDMLEVGNGGM+ AEYR+HFSIWAL
Sbjct: 236 RTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALA 295
Query: 293 KAPLLIGCDVRNMTKETMEILSNKEVIQVNQDPLGVQGRRILGQGKNGCQEVWAGPLSGN 352
KAPLLIGCDVR+M+++T ILSN EVI VNQD LGVQG+++ Q NG EVWAGPLS N
Sbjct: 296 KAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKV--QSDNGL-EVWAGPLSNN 352
Query: 353 RLAVVLWNRCEESANIIVKLPSVGLDGSSPYSVRDLWKHETLSENVVGTFGAQVDVHDCK 412
R AVVLWNR A I ++GL GS + RDLW H + + G A V HDCK
Sbjct: 353 RKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQ--GQISASVAPHDCK 410
Query: 413 MYIFTP 418
MY+ TP
Sbjct: 411 MYVLTP 416
>AK067532
Length = 222
Score = 189 bits (480), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/142 (64%), Positives = 104/142 (73%), Gaps = 1/142 (0%)
Query: 118 LLPDPKTFPSGIKDLADYVHGKGLKLGIYSDAGIFTC-QVRPGSLHHEKDDAAIFASWGV 176
L+ + KTFP GIK LADYVH KGLKLGIYSDAG TC +V+PGSL HE+ DA FASWGV
Sbjct: 52 LVANKKTFPHGIKALADYVHSKGLKLGIYSDAGFKTCAKVQPGSLGHEEQDAKTFASWGV 111
Query: 177 DYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQDDPALWAGKVGNSWRTTD 236
DYLKYDNC N +KP +RYP M AL GR I++SLCEWG PA W GNSWRTT+
Sbjct: 112 DYLKYDNCNNGDLKPLERYPEMSKALMMAGRPIYFSLCEWGDMHPAKWGAAYGNSWRTTN 171
Query: 237 DIQDTWKSMTDIADKNNKWASY 258
DI DTW+SM AD+N WA +
Sbjct: 172 DIADTWESMVSRADENEVWARH 193
>Os01g0518500 Glycoside hydrolase, family 27 protein
Length = 649
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/362 (25%), Positives = 138/362 (38%), Gaps = 89/362 (24%)
Query: 49 YGKLQLNNGLALTPQMGWNSWNFFACNINETVIRDTADALVSTGLADLGYNYVNIDDCWS 108
+G + N LA P GWNS++ F+ ++E A+ L L GY + ID W
Sbjct: 29 WGTSEANEQLAEFPPRGWNSYDSFSWIVDENTYMQNAEILAEKLLPH-GYEFAVIDYLWY 87
Query: 109 N--VKRGKKDQL-----------LPDPKTFPS-----GIKDLADYVHGKGLKLGIYSDAG 150
V D PD + FPS G LA+ VHG GLK GI+ G
Sbjct: 88 RKYVHGAYTDSYGFDNIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKG 147
Query: 151 IF------------------------------------TCQVRPGSLHHEKDDAAI---- 170
I TC P D
Sbjct: 148 ISLQAVNGNTPILDIKTGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAF 207
Query: 171 -------FASWGVDYLKYDNCYNLGIKPKDRYPPMRDALNSTGRQIFYSLCEWGQDDPAL 223
+A WGVD++K D + PK+ + + L R I S+ + PAL
Sbjct: 208 LRSLYQQYADWGVDFVKVDCIFGTDYSPKE-IITISELLAELDRPIILSISPGTEVTPAL 266
Query: 224 WA--GKVGNSWRTTDDIQDTWKSMTDIADKNNKWASYAGPGG-------WNDPDMLEVG- 273
+ N +R T D D WK ++ D ++ +A+ G W D DML G
Sbjct: 267 AKNISQHVNMYRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRSWPDLDMLPFGW 326
Query: 274 --NGG----------MTFAEYRAHFSIWALMKAPLLIGCDVRNMTKETMEILSNKEVIQV 321
N G +T E R ++W++ K+PL+ G D+R++ +T+ I++N ++++
Sbjct: 327 LTNAGVNQGPHRQCELTSDEQRTQIALWSMAKSPLMYGGDLRHLDNDTLSIITNPTLLKI 386
Query: 322 NQ 323
N
Sbjct: 387 NH 388
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,792,538
Number of extensions: 718734
Number of successful extensions: 1340
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1335
Number of HSP's successfully gapped: 4
Length of query: 425
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 321
Effective length of database: 11,605,545
Effective search space: 3725379945
Effective search space used: 3725379945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)