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Os10g0493600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0326) R2 : 0.561
β1 : -2.75 (0.12) R2dD : 0.46 R2D : 0.371
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.39 (0.107) R2dE : 0.165 R2E : 0.13
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.38 (0.0698) R2dN8 : 0.0184 R2N8 : -0.0237
σ : 0.611
deviance : 171.94
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1031
memory length : 1092
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 6.12

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.57 0.567 10.5 -2.48 1.53 2.5 3.03 1.83 -0.238 3.74 1018 261 10.4 10.2
147.47 0.566 10.6 -2.5 1.47 2.49 2.35 -- -0.231 3.66 1017 261 10.6 10
167.86 0.603 10.6 -2.43 1.28 2.11 -- 0.951 -0.309 3.27 1016 199 11 10.5
161.66 0.592 10.5 -2.44 1.69 2.63 -- -- -0.233 4.11 1020 214 10.9 10.5
166.61 0.601 10.6 -2.62 -- 1.33 -- 3 -0.271 -- 1019 958 11.6 8.12
182.52 0.633 10.6 -2.41 0.8 -- 1.61 -- -0.328 23.5 -- -- -- --
193.03 0.651 10.6 -2.47 0.803 -- -- -- -0.332 22.9 -- -- -- --
171.94 0.611 10.6 -2.75 -- 1.39 -- -- -0.38 -- 1031 1092 11 6.12
329.54 0.845 10.5 -- 1.83 2.4 -- -- -0.0334 4.58 1031 210 11 10.6
233.13 0.713 10.6 -2.45 -- -- -- -- -0.326 -- -- -- -- --
353.47 0.879 10.5 -- 0.784 -- -- -- -0.057 22.7 -- -- -- --
334.55 0.852 10.5 -- -- 1.32 -- -- -0.0624 -- 1055 1214 10.9 3.87
391.44 0.923 10.5 -- -- -- -- -- -0.0543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.73 atmosphere 1015.0 270 < th dose dependent rect. 10 10
5 149.04 atmosphere 995.0 270 > th dose dependent rect. 7 16
6 149.40 atmosphere 1000.0 90 > th dose independent rect. 9 16
8 149.75 atmosphere 995.0 90 > th dose dependent rect. 9 16
10 150.46 atmosphere 995.0 270 > th dose dependent rect. 7 18
14 150.79 temperature 30.0 270 < th dose dependent rect. 7 3
17 151.03 atmosphere 995.0 270 > th dose dependent rect. 7 4
18 151.18 atmosphere 1015.0 10 < th dose dependent rect. 12 10
23 151.62 atmosphere 1000.0 270 > th dose independent rect. 7 16
26 151.73 humidity 50.0 270 > th dose independent rect. 11 9
28 151.87 humidity 50.0 270 > th dose independent rect. 11 20
49 152.69 temperature 30.0 270 < th dose independent rect. 7 4
50 152.73 atmosphere 1000.0 270 > th dose independent rect. 7 4
61 153.04 temperature 30.0 270 < th dose independent rect. 20 15
74 153.29 atmosphere 1000.0 30 > th dose independent rect. 9 3
86 153.60 temperature 30.0 720 < th dose dependent rect. 23 11
97 153.87 atmosphere 1015.0 270 < th dose dependent sin 21 NA
101 153.94 atmosphere 995.0 270 > th dose dependent rect. 7 10
114 154.18 temperature 30.0 43200 > th dose dependent rect. 8 2
133 154.25 atmosphere 1015.0 90 < th dose dependent sin 19 NA
159 154.64 atmosphere 995.0 30 > th dose dependent rect. 9 3
204 155.15 temperature 30.0 43200 > th dose independent rect. 8 2
245 155.32 temperature 10.0 720 > th dose dependent rect. 2 5
250 155.36 temperature 30.0 43200 < th dose independent rect. 23 11
251 155.36 temperature 30.0 43200 < th dose independent rect. 21 13
254 155.39 temperature 30.0 43200 < th dose independent rect. 8 2
255 155.40 temperature 30.0 43200 < th dose independent rect. 19 15
261 155.43 temperature 30.0 43200 < th dose independent rect. 6 4
280 155.54 atmosphere 995.0 30 > th dose dependent rect. 9 10
296 155.71 humidity 60.0 43200 > th dose independent rect. 12 1
298 155.72 atmosphere 1010.0 270 < th dose independent rect. 11 9
330 155.85 humidity 60.0 43200 < th dose independent rect. 12 1
375 156.06 atmosphere 995.0 270 > th dose dependent sin 22 NA
398 156.13 atmosphere 1015.0 270 < th dose independent rect. 11 20
406 156.17 temperature 30.0 43200 > th dose dependent sin 8 NA
414 156.22 atmosphere 1015.0 720 < th dose dependent rect. 11 2
424 156.24 atmosphere 1000.0 270 > th dose independent rect. 6 9
474 156.50 temperature 30.0 720 < th dose dependent rect. 23 4
478 156.53 humidity 90.0 10 < th dose dependent rect. 7 5
514 156.56 atmosphere 1000.0 30 > th dose independent rect. 20 16
525 156.65 temperature 30.0 720 < th dose dependent sin 7 NA
540 156.72 temperature 30.0 90 < th dose independent rect. 9 3
541 156.72 wind 1.0 43200 < th dose independent rect. 22 4
546 156.75 wind 1.0 43200 < th dose independent rect. 16 11
566 156.87 temperature 25.0 43200 > th dose dependent rect. 6 1
575 156.93 humidity 80.0 43200 > th dose independent rect. 19 1
594 157.06 wind 1.0 43200 < th dose independent rect. 21 6
599 157.07 wind 1.0 43200 > th dose independent rect. 22 4
622 157.13 temperature 25.0 720 < th dose dependent rect. 1 2
625 157.14 humidity 60.0 43200 > th dose independent rect. 11 3
627 157.14 humidity 90.0 30 < th dose dependent sin 4 NA
634 157.18 humidity 80.0 43200 > th dose independent rect. 18 3
638 157.19 humidity 90.0 14400 < th dose dependent rect. 22 7
669 157.26 wind 9.0 270 < th dose independent rect. 11 20
691 157.35 humidity 90.0 30 < th dose dependent rect. 22 14
692 157.36 temperature 30.0 43200 > th dose independent sin 9 NA
702 157.40 wind 1.0 14400 < th dose dependent rect. 11 2
709 157.42 humidity 80.0 43200 < th dose independent rect. 18 3
730 157.47 temperature 30.0 43200 < th dose independent sin 9 NA
731 157.47 atmosphere 1015.0 720 < th dose dependent rect. 9 5
736 157.49 wind 1.0 43200 < th dose independent rect. 18 9
746 157.52 humidity 80.0 43200 > th dose independent rect. 17 6
790 157.61 humidity 90.0 30 < th dose dependent rect. 20 16
826 157.71 atmosphere 1015.0 720 < th dose dependent rect. 8 7
874 157.82 humidity 50.0 10 > th dose independent rect. 12 21
884 157.86 temperature 10.0 270 > th dose independent rect. 7 4
886 157.86 atmosphere 1015.0 270 < th dose independent rect. 7 4
888 157.86 temperature 10.0 270 > th dose independent rect. 11 20
890 157.87 wind 1.0 43200 < th dose dependent rect. 22 5
894 157.88 temperature 30.0 43200 > th dose dependent no NA NA
987 157.89 wind 1.0 43200 < th dose independent rect. 10 3
988 157.89 precipitation 0.1 270 < th dose independent rect. 7 4
990 157.89 precipitation 0.1 270 < th dose dependent rect. 7 4
993 157.89 wind 1.0 43200 < th dose dependent rect. 18 9