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Os01g0518500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 27 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0157) R2 : 0.0153
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0883 (0.0331) R2dN8 : 0.0198 R2N8 : 0.0153
σ : 0.296
deviance : 40.27
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.07 0.253 10.8 0.964 0.242 -0.743 -0.0147 8.14 -0.0384 12.6 30 3770 -- --
34.23 0.275 11 -0.261 0.232 -0.252 -0.0656 -- -0.111 12.4 15.65 24956 -- --
29.07 0.251 10.8 0.963 0.242 -0.743 -- 8.15 -0.0385 12.5 30.01 3769 -- --
32.68 0.266 11 -0.0923 0.227 -0.383 -- -- -0.0696 11.8 14.6 11255 -- --
32.67 0.266 10.8 1 -- -0.814 -- 8.4 -0.0471 -- 30.04 3720 -- --
34.52 0.275 11 -0.285 0.233 -- -0.0776 -- -0.117 12.4 -- -- -- --
34.54 0.275 11 -0.288 0.233 -- -- -- -0.118 12.2 -- -- -- --
35.99 0.279 11 -0.1 -- -0.405 -- -- -0.0685 -- 14.44 11143 -- --
32.84 0.267 11 -- 0.248 -0.425 -- -- -0.0483 12.2 14.5 11226 -- --
37.96 0.288 11 -0.296 -- -- -- -- -0.121 -- -- -- -- --
36.73 0.283 11 -- 0.237 -- -- -- -0.0855 12.3 -- -- -- --
36.16 0.28 11 -- -- -0.47 -- -- -0.0478 -- 14.52 11142 -- --
40.27 0.296 11 -- -- -- -- -- -0.0883 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.93 humidity 80 4320 < th dose dependent rect. 20 1
3 28.25 humidity 80 4320 > th dose independent rect. 21 1
8 28.86 atmosphere 1000 720 > th dose independent rect. 7 19
10 28.89 temperature 30 1440 > th dose independent rect. 18 17
13 28.95 humidity 80 4320 < th dose independent rect. 20 2
16 28.98 atmosphere 1000 90 > th dose independent sin 15 NA
20 29.00 temperature 30 1440 > th dose independent rect. 9 2
23 29.04 atmosphere 1000 720 > th dose independent rect. 15 19
46 29.09 temperature 30 1440 < th dose independent rect. 18 17
48 29.10 temperature 30 1440 < th dose independent rect. 9 1
52 29.13 atmosphere 1000 270 > th dose independent rect. 10 22
60 29.14 temperature 30 1440 > th dose dependent rect. 18 17
65 29.17 temperature 30 1440 > th dose dependent rect. 10 1
79 29.24 temperature 30 1440 < th dose independent rect. 22 13
86 29.26 radiation 20 1440 < th dose independent rect. 11 2
91 29.28 temperature 30 1440 < th dose independent rect. 5 6
94 29.29 temperature 30 1440 < th dose independent rect. 24 11
101 29.31 atmosphere 1000 720 > th dose independent rect. 13 14
138 29.38 temperature 25 4320 > th dose dependent rect. 6 1
144 29.40 atmosphere 1000 720 > th dose independent sin 21 NA
146 29.40 temperature 30 14400 > th dose independent rect. 18 15
158 29.42 humidity 70 43200 > th dose dependent rect. 19 4
195 29.52 atmosphere 1000 30 > th dose independent rect. 5 23
207 29.55 humidity 70 43200 > th dose dependent rect. 20 2
208 29.56 temperature 30 4320 > th dose independent sin 7 NA
256 29.64 temperature 30 4320 < th dose independent sin 7 NA
259 29.64 temperature 25 4320 > th dose independent rect. 5 2
274 29.64 temperature 30 1440 > th dose dependent sin 9 NA
282 29.65 temperature 30 4320 > th dose independent rect. 18 21
287 29.66 atmosphere 1000 10 > th dose independent rect. 13 15
319 29.68 wind 1 43200 < th dose dependent rect. 2 6
321 29.69 temperature 30 4320 > th dose independent rect. 9 6
353 29.71 humidity 70 720 > th dose dependent rect. 19 2
357 29.72 temperature 25 4320 < th dose independent rect. 5 2
362 29.72 temperature 30 4320 < th dose independent rect. 18 21
377 29.74 atmosphere 1000 10 > th dose independent rect. 15 13
384 29.75 atmosphere 995 720 > th dose independent rect. 9 8
393 29.76 temperature 30 4320 < th dose independent rect. 9 6
399 29.76 temperature 30 4320 < th dose independent rect. 22 17
400 29.76 temperature 30 4320 < th dose independent rect. 20 19
411 29.77 temperature 30 4320 < th dose independent rect. 24 15
461 29.81 temperature 30 4320 < th dose independent rect. 14 22
488 29.82 temperature 30 4320 > th dose independent rect. 13 23
496 29.83 atmosphere 1000 10 > th dose independent rect. 16 16
500 29.84 humidity 80 720 > th dose independent rect. 19 2
550 29.87 temperature 30 4320 > th dose independent rect. 15 21
571 29.88 wind 1 43200 < th dose independent rect. 2 6
572 29.88 atmosphere 995 720 > th dose independent rect. 15 8
592 29.89 wind 1 43200 > th dose independent rect. 2 6
617 29.90 temperature 30 4320 > th dose independent no NA NA
627 29.90 temperature 30 4320 > th dose independent rect. 9 10
646 29.90 temperature 30 4320 < th dose independent rect. 9 14
714 29.90 temperature 30 4320 < th dose independent rect. 5 20
761 29.91 temperature 30 4320 < th dose independent no NA NA
768 29.91 temperature 30 4320 < th dose independent rect. 9 10
780 29.91 temperature 30 4320 < th dose independent rect. 5 15
810 29.91 temperature 30 4320 < th dose independent rect. 24 21
826 29.91 temperature 30 4320 < th dose independent rect. 20 23
827 29.91 temperature 30 4320 < th dose independent rect. 22 23
828 29.91 temperature 30 4320 < th dose independent rect. 24 23
925 29.93 wind 1 4320 < th dose independent rect. 4 1
936 29.93 atmosphere 1000 90 > th dose independent rect. 15 12
951 29.93 atmosphere 1000 270 > th dose independent rect. 21 23