BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0674400 Os07g0674400|AK119672
(140 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0674400 Conserved hypothetical protein 235 1e-62
Os07g0674500 Conserved hypothetical protein 80 4e-16
Os03g0342650 79 9e-16
Os03g0342100 Conserved hypothetical protein 78 2e-15
Os03g0341600 Conserved hypothetical protein 76 7e-15
>Os07g0674400 Conserved hypothetical protein
Length = 140
Score = 235 bits (599), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/140 (85%), Positives = 120/140 (85%)
Query: 1 MASRXXXXXXXXXXXXXXXXXXXXGRLVVTGVVPCNTGSLIDIATSPAFPNADVELRCAG 60
MASR GRLVVTGVVPCNTGSLIDIATSPAFPNADVELRCAG
Sbjct: 1 MASRVVVLLVVAAACVLGAADAKLGRLVVTGVVPCNTGSLIDIATSPAFPNADVELRCAG 60
Query: 61 KLVAGATTNSNGSFAMEADLTSGLAMLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQGPL 120
KLVAGATTNSNGSFAMEADLTSGLAMLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQGPL
Sbjct: 61 KLVAGATTNSNGSFAMEADLTSGLAMLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQGPL 120
Query: 121 TRLLGGIFRLFPAGFSFHAH 140
TRLLGGIFRLFPAGFSFHAH
Sbjct: 121 TRLLGGIFRLFPAGFSFHAH 140
>Os07g0674500 Conserved hypothetical protein
Length = 145
Score = 80.1 bits (196), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query: 27 LVVTGVVPCNTGSLIDIATSPAFPNADVELRCAGKLVAGA-----TTNSNGSFAMEADLT 81
+VV G VPCN G+ + ++P FPNA V+L+CAG VA TT+ G F M + T
Sbjct: 34 VVVMGYVPCNNGTSMKSGSAPGFPNAVVQLQCAGDAVAAVAAGSATTDGKGWFRMAMNTT 93
Query: 82 SGLAMLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQGPLTRLLGGIFRLFPAGFSF 137
+ L+ + GC LVV TPL CDA LPA G+ LQ L L+ +F FP GFS+
Sbjct: 94 AALSSVASGCSLVVTTPLATCDAALPATGT----LQSGLRLLVSMVF--FPRGFSY 143
>Os03g0342650
Length = 121
Score = 79.3 bits (194), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 51 NADVELRCAGKLVAGATTNSNGSFAMEADLTSGLAMLIGG-CKLVVDTPLIKCDANLPAA 109
+A VELRC G VA ATT+ NGSFAMEAD+ + G C+LVVDTPL +CDA LPAA
Sbjct: 28 DAKVELRCGGGAVARATTSQNGSFAMEADVALAAVAAVAGACELVVDTPLARCDARLPAA 87
Query: 110 GSLVSYLQGPLTR---LLGGIFRLFPAGFSFH 138
G LVS +Q T LL G RL PAG SF
Sbjct: 88 GRLVSDVQQGGTLIGGLLDGALRLAPAGCSFR 119
>Os03g0342100 Conserved hypothetical protein
Length = 172
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 23/133 (17%)
Query: 28 VVTGVVPCNTGSLIDIATSPAFPNADVELRCAGKLVAGATTNSNGSFAMEA---DLTSGL 84
+VTGVVPC+ GS I+ A+ PAFP+A V++ C G++V GAT + G+F + + T +
Sbjct: 39 LVTGVVPCSAGSSINAASVPAFPDAGVQMVCGGRVVGGATADGTGAFTINMGALNATMLM 98
Query: 85 AMLIGGCKLVVDTPLIKCDANLPA-AGSLVSYLQGP-------------------LTRLL 124
AM CK+VV TPL CDA+L A AG+L + +Q L+ LL
Sbjct: 99 AMAGNQCKVVVTTPLAACDASLAAVAGTLTAPVQLLGGTGGLGGLGGLITLITQILSGLL 158
Query: 125 GGIFRLFPAGFSF 137
G I + P FS
Sbjct: 159 GEILNIIPLPFSL 171
>Os03g0341600 Conserved hypothetical protein
Length = 182
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
Query: 28 VVTGVVPCNTGSLIDIATSPAFPNADVELRCAGKLVAGATTNSNGSFAME-ADLTSG--L 84
+VTGVVPC+ GS I+ A+ P FPNA V+L C G+ VAGAT + +G+FA+ LT+
Sbjct: 40 LVTGVVPCSAGSSINAASVPGFPNAAVQLECGGRAVAGATADGSGAFAINLGKLTAATLT 99
Query: 85 AMLIGGCKLVVDTPLIKCDANLPA-AGSLVSYLQ 117
+L C++VV TPL CDA+L AG+L + +Q
Sbjct: 100 PLLNDRCRVVVTTPLAACDASLAGVAGTLAAPVQ 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,991,637
Number of extensions: 151808
Number of successful extensions: 315
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 311
Number of HSP's successfully gapped: 5
Length of query: 140
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 49
Effective length of database: 12,284,327
Effective search space: 601932023
Effective search space used: 601932023
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 150 (62.4 bits)