Os07g0674400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0674400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 574.77 | 1.13 | 9.26 | -1.49 | 2.09 | 6.69 | 1.63 | 28.1 | -1.08 | 21.8 | 0.8296 | 4200 | 18 | 11.3 |
| 838.45 | 1.36 | 8.08 | -2.23 | 2.09 | 1.61 | 1.73 | -- | -0.479 | 22 | 0.8296 | 4200 | 18 | 11.3 |
| 583.25 | 1.12 | 9.26 | -1.38 | 2.08 | 6.83 | -- | 28.5 | -1.07 | 21.7 | 0.7847 | 4220 | 18 | 11.3 |
| 605.16 | 1.15 | 8.2 | -1.82 | 2.06 | 2.95 | -- | -- | -1.08 | 21.8 | 0.01492 | 47520 | 18.6 | 8.83 |
| 816.3 | 1.33 | 9.29 | -1.08 | -- | 6.84 | -- | 28.7 | -1.12 | -- | 0.7939 | 5010 | 17.9 | 11.4 |
| 844.83 | 1.36 | 8.09 | -2.21 | 2.09 | -- | 1.74 | -- | -0.492 | 22.1 | -- | -- | -- | -- |
| 856.62 | 1.37 | 8.09 | -2.28 | 2.08 | -- | -- | -- | -0.494 | 22 | -- | -- | -- | -- |
| 758.57 | 1.28 | 8.33 | -2.46 | -- | 3.99 | -- | -- | -1.64 | -- | -29.96 | 47520 | 18.8 | 9.55 |
| 633.24 | 1.17 | 8.11 | -- | 2.04 | 3.3 | -- | -- | -0.61 | 21.8 | 0.02805 | 47520 | 18.5 | 9.35 |
| 1117.71 | 1.56 | 8.03 | -2.26 | -- | -- | -- | -- | -0.493 | -- | -- | -- | -- | -- |
| 993.76 | 1.47 | 8.03 | -- | 2.08 | -- | -- | -- | -0.24 | 21.9 | -- | -- | -- | -- |
| 787.22 | 1.31 | 8.06 | -- | -- | 3.98 | -- | -- | -0.653 | -- | -86.76 | 47520 | 18.5 | 7.52 |
| 1251.99 | 1.65 | 7.98 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 543.08 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 2 | 544.13 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 3 | 544.53 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 4 | 544.75 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 12 | 547.07 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 14 | 547.08 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 28 | 552.89 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 31 | 554.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 35 | 555.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 40 | 556.46 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 51 | 558.83 | wind | 3 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 62 | 561.74 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 64 | 561.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 66 | 561.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 70 | 562.17 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 74 | 562.79 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 88 | 563.74 | wind | 9 | 43200 | < th | dose dependent | rect. | 9 | 6 |
| 90 | 563.89 | wind | 5 | 43200 | < th | dose independent | sin | 23 | NA |
| 107 | 565.33 | wind | 5 | 43200 | > th | dose independent | sin | 22 | NA |
| 171 | 570.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 177 | 570.46 | wind | 5 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 235 | 574.55 | wind | 3 | 43200 | > th | dose dependent | sin | 23 | NA |
| 239 | 574.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 242 | 574.93 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 9 |
| 249 | 575.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 258 | 575.60 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 260 | 575.63 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 261 | 575.64 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 276 | 575.99 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 378 | 580.57 | radiation | 1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 401 | 580.97 | wind | 5 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 432 | 581.94 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 582 | 586.68 | radiation | 40 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 767 | 591.53 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 789 | 591.81 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 803 | 592.05 | wind | 9 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 892 | 593.64 | wind | 9 | 43200 | < th | dose dependent | sin | 0 | NA |
| 973 | 595.17 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 13 |