BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0674400 Os07g0674400|AK119672
         (140 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G16660.1  | chr3:5676904-5677788 FORWARD LENGTH=181             72   7e-14
AT3G16670.1  | chr3:5681500-5682111 FORWARD LENGTH=155             59   1e-09

>AT3G16660.1 | chr3:5676904-5677788 FORWARD LENGTH=181
          Length = 180

 Score = 72.4 bits (176), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 68/113 (60%), Gaps = 7/113 (6%)

Query: 29  VTGVVPCNTGSLIDIATSPAFPNADVELRC--AGKLVAGATTNSNGSFAMEAD-LTSGLA 85
           + GVV C+        ++PAF NA VEL+C    ++V+ ATTN+ G F++  D +   L+
Sbjct: 65  INGVVFCSLNGAPSGTSTPAFANAGVELQCGRQNRVVSTATTNAAGLFSLPTDSIQMLLS 124

Query: 86  MLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQ---GPLTRLLGGIFRLFPAGF 135
            L+  C++VV TPL  C+ANLP+ G+LVS L      LT LL  I  + PAGF
Sbjct: 125 TLLSDCRVVVTTPLSTCNANLPSVGNLVSRLAMIGNSLTGLL-NIISIIPAGF 176



>AT3G16670.1 | chr3:5681500-5682111 FORWARD LENGTH=155
          Length = 154

 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 6/114 (5%)

Query: 28  VVTGVVPCN-TGSLIDIATSPAFPNADVELRCAG--KLVAGATTNSNGSFAMEAD-LTSG 83
           ++ GV+ C   G+ ++   +PAF NA V+L+C    ++VA   TN  G F    + +   
Sbjct: 37  IINGVLFCTINGAPLNGTPAPAFANAVVQLQCGNLNRVVAETITNIAGLFTFSTNGIQIS 96

Query: 84  LAMLIGGCKLVVDTPLIKCDANLPAAGSLVSYLQ--GPLTRLLGGIFRLFPAGF 135
           L  L+  C++VV TP   CDA LP+ G L+S L   G +   L  I  + P GF
Sbjct: 97  LPTLLNDCRIVVPTPRSSCDATLPSTGQLISQLNLVGSIVSGLLNIVAILPTGF 150



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,451,398
Number of extensions: 89652
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 2
Length of query: 140
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 52
Effective length of database: 8,693,961
Effective search space: 452085972
Effective search space used: 452085972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 106 (45.4 bits)