BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0663300 Os07g0663300|AK100642
(427 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0663300 Similar to RNA-binding protein BRUNOL5 (Fragment) 749 0.0
Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment) 352 4e-97
Os05g0373400 Paraneoplastic encephalomyelitis antigen famil... 351 7e-97
Os09g0123200 Paraneoplastic encephalomyelitis antigen famil... 123 3e-28
Os04g0682400 RNA-binding region RNP-1 (RNA recognition moti... 68 1e-11
>Os07g0663300 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 427
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/427 (86%), Positives = 370/427 (86%)
Query: 1 MAGDGEDGGERVRLFVGQVPRSMAEEDILXXXXXXXXXXXXXXXXXXXXGASRGCCFVVC 60
MAGDGEDGGERVRLFVGQVPRSMAEEDIL GASRGCCFVVC
Sbjct: 1 MAGDGEDGGERVRLFVGQVPRSMAEEDILAVVRAAARADDATVIRDRATGASRGCCFVVC 60
Query: 61 SSREEADKAIAAYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSA 120
SSREEADKAIAAYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSA
Sbjct: 61 SSREEADKAIAAYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSA 120
Query: 121 LFSQYGNIRQLKVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVV 180
LFSQYGNIRQLKVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVV
Sbjct: 121 LFSQYGNIRQLKVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVV 180
Query: 181 KLADTXXXXXXXXXXXXXXXPSKPLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYG 240
KLADT PSKPLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYG
Sbjct: 181 KLADTEREKQARKAQKAQAQPSKPLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYG 240
Query: 241 HTKNPLALYSTMYPHVXXXXXXXXXXTNIFPGTDPKISNLIQSAGYIQPPYPDLSGLHYP 300
HTKNPLALYSTMYPHV TNIFPGTDPKISNLIQSAGYIQPPYPDLSGLHYP
Sbjct: 241 HTKNPLALYSTMYPHVNQGNLLQGLNTNIFPGTDPKISNLIQSAGYIQPPYPDLSGLHYP 300
Query: 301 VSYAGALVGDTPQYFSDGKVNIPXXXXXXXXXXXXTKIGSKIEGPPRANLFVYDIPQEYG 360
VSYAGALVGDTPQYFSDGKVNIP TKIGSKIEGPPRANLFVYDIPQEYG
Sbjct: 301 VSYAGALVGDTPQYFSDGKVNIPNSHSNHASSAANTKIGSKIEGPPRANLFVYDIPQEYG 360
Query: 361 DEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNGSQIGGKMLK 420
DEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNGSQIGGKMLK
Sbjct: 361 DEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNGSQIGGKMLK 420
Query: 421 VQLKRET 427
VQLKRET
Sbjct: 421 VQLKRET 427
>Os01g0938200 Similar to RNA-binding protein BRUNOL5 (Fragment)
Length = 460
Score = 352 bits (902), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 204/429 (47%), Positives = 254/429 (59%), Gaps = 28/429 (6%)
Query: 12 VRLFVGQVPRSMAEEDILXXXXXXXXXXXXXXXXXXXXGASRGCCFVVCSSREEADKAIA 71
V+LFVGQVP+ M E ++L ASRGCCF++C SREEADKA+
Sbjct: 40 VKLFVGQVPKHMTEAELLAMFQEVAIVDEVTVIKDKATKASRGCCFLICPSREEADKAVN 99
Query: 72 AYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSALFSQYGNIRQL 131
AYHNK TLPGAS +QVKYADGELERL E KLFIGMLP++V + E++ LFS+YGNI+ L
Sbjct: 100 AYHNKHTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVTDTELTDLFSKYGNIKDL 157
Query: 132 KVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVVKLADTXXXXXX 191
++LR Q+T KA CA L++ +KE A AAIEALNG + GSS LVVK ADT
Sbjct: 158 QILRGSQQTSKAG-CAFLKYETKEQAVAAIEALNGKHKI-EGSSVPLVVKWADTEKERQA 215
Query: 192 XXXXXXXXXPSK-----PLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYGHTKNPL 246
S P+ Q S+ GA QM ++P YN Y+ PG YG + PL
Sbjct: 216 RKAQKAQLQSSNMPSASPM------QQSSLFGALQMGYMPQYNGFGYQPPGTYGLMQYPL 269
Query: 247 ------ALYSTMYPHVXXXXXXXXXXTNIFPGTDPKISNLIQSAGYIQPPYPDLSGLHYP 300
A + M V + P + P+ N +Q + PYP + G+ Y
Sbjct: 270 SPMQNQATFPNMVQPVNQGNSIRGVNPELSPNSVPRSFNAMQ----LSSPYPPVPGVQYA 325
Query: 301 VSYAGALVGDTP--QYFSDGKVNIPXXXXXXXXXXXXTKIGSKIEGPPRANLFVYDIPQE 358
SY G L+ + P FS KV I + G +IEGPP ANLF+Y IPQ+
Sbjct: 326 GSYPGGLMNNRPFGNSFSSIKVPI-VNANSPASSSPSSNPGGQIEGPPGANLFIYHIPQD 384
Query: 359 YGDEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNGSQIGGKM 418
YGD+DL+N FQ FGR+LS KVF+D+ATG SKCFGFVSYD+PASAQAAI MNG Q+G K
Sbjct: 385 YGDQDLSNAFQRFGRVLSAKVFVDKATGSSKCFGFVSYDSPASAQAAIGVMNGFQLGSKK 444
Query: 419 LKVQLKRET 427
LKVQLKR+
Sbjct: 445 LKVQLKRDN 453
>Os05g0373400 Paraneoplastic encephalomyelitis antigen family protein
Length = 466
Score = 351 bits (900), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 201/432 (46%), Positives = 254/432 (58%), Gaps = 17/432 (3%)
Query: 3 GDGEDGGERVRLFVGQVPRSMAEEDILXXXXXXXXXXXXXXXXXXXXGASRGCCFVVCSS 62
G+G G E V+LFVGQVP+ M E+++ ASRGCCF++C S
Sbjct: 38 GNGR-GEESVKLFVGQVPKQMTEDELAAMFAAVAVVDEVTLIRDKATKASRGCCFLICPS 96
Query: 63 REEADKAIAAYHNKCTLPGASRAMQVKYADGELERLAAEQKLFIGMLPRDVKENEVSALF 122
REEADKA+ AYHNK TLPGAS +QVKYADGELERL E KLFIGMLP++V + E++ LF
Sbjct: 97 REEADKAVNAYHNKRTLPGASSPLQVKYADGELERL--EHKLFIGMLPKNVTDAEMTDLF 154
Query: 123 SQYGNIRQLKVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATLVVKL 182
SQYGNI+ L++LR Q+T KA CA L++ +KE A AAIEALNG + GSS LVVK
Sbjct: 155 SQYGNIKDLQILRGSQQTSKAG-CAFLKYETKEQALAAIEALNGKHKI-EGSSVPLVVKW 212
Query: 183 ADTXXXXXXXXXXXXXXXPSKPLRFYLFPQLLSISGAPQMSFLPPYNVLDYKVPGHYGHT 242
ADT PS Q S+ GA QM ++P YN Y+ G YG
Sbjct: 213 ADTEKERQARKAQKAQFHPSNMSNPNAM-QQSSLFGAMQMGYVPQYNGYGYQPQGTYGLM 271
Query: 243 KNPL------ALYSTMYPHVXXXXXXXXXXTNIFPGTDPKISNLIQSAGYIQPPYPDLSG 296
+ PL A + M V + + P + P+ N +Q + PY +
Sbjct: 272 QYPLSPMQNQAAFPNMVQSVNQGSSIRGVNSELSPNSAPRSFNSMQ----LGSPYSPVPS 327
Query: 297 LHYPVSYAGALVGDTPQYFSDGKVNIPXXXXXXXXXXXXTKI-GSKIEGPPRANLFVYDI 355
+ YP SY G + P S + +P + G +IEGPP ANLF+Y I
Sbjct: 328 MQYPGSYPGNAINSRPFVNSHNSMKVPNANASSPTSSSTSSNPGPQIEGPPGANLFIYHI 387
Query: 356 PQEYGDEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDTPASAQAAIRRMNGSQIG 415
PQE+GD+DLA FQ FGR+LS KVF+D+ATG+SKCFGF+SYD+PASAQ AI MNG Q+G
Sbjct: 388 PQEFGDQDLAGAFQGFGRVLSAKVFVDKATGLSKCFGFISYDSPASAQTAISMMNGYQLG 447
Query: 416 GKMLKVQLKRET 427
GK LKVQLKR+
Sbjct: 448 GKKLKVQLKRDN 459
>Os09g0123200 Paraneoplastic encephalomyelitis antigen family protein
Length = 637
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/186 (36%), Positives = 101/186 (54%), Gaps = 7/186 (3%)
Query: 3 GDGEDGGER---VRLFVGQVPRSMAEEDILXXXXXXXXXXXXXXXXXXXXGASRGCCFVV 59
GD D R V+LF+G VPR+ E+D+ G +GCCFV
Sbjct: 9 GDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVK 68
Query: 60 CSSREEADKAIAAYHNKCTLPGASRAMQVKYADGELERLAA-EQKLFIGMLPRDVKENEV 118
++ EEA++AI A HN+ TLPGA +QV+YADGE ER A E KLF+ L + E+
Sbjct: 69 YATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEI 128
Query: 119 SALFSQYGNIRQLKVLRSPQKTRKAAACAILEFGSKEHARAAIEALNGTRVVFNGSSATL 178
+F+ YG++ + +++ R++ C ++F S+E A AA+ AL+G V G L
Sbjct: 129 EEIFAPYGHVEDVYIMKD--GMRQSRGCGFVKFSSREPALAAMSALSGN-YVMRGCEQPL 185
Query: 179 VVKLAD 184
+++ AD
Sbjct: 186 IIRFAD 191
>Os04g0682400 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1008
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 339 GSKIEGPPRANLFVYDIPQEYGDEDLANLFQEFGRILSTKVFIDRATGVSKCFGFVSYDT 398
G K++ NL+V ++P G L LF FG+I+ ++V D TG+S+ +GFV Y
Sbjct: 284 GGKLKEVDNTNLYVGNLPASVGSHKLIELFLPFGQIVRSRVVDDCFTGLSQGYGFVKYSD 343
Query: 399 PASAQAAIRRMNGSQIGGKMLKVQL 423
P A AI+RMNG + G LKV++
Sbjct: 344 PRCASEAIKRMNGRLVEGTALKVRV 368
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,208,810
Number of extensions: 482921
Number of successful extensions: 1613
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 5
Length of query: 427
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 323
Effective length of database: 11,605,545
Effective search space: 3748591035
Effective search space used: 3748591035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)