BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0659300 Os07g0659300|AK069789
         (233 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0659300  Conserved hypothetical protein                      286   6e-78
Os03g0356526                                                      181   5e-46
Os05g0385400  Conserved hypothetical protein                      106   2e-23
Os01g0952900  Conserved hypothetical protein                       86   2e-17

>Os07g0659300 Conserved hypothetical protein
          Length = 233

 Score =  286 bits (733), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 156/233 (66%), Positives = 156/233 (66%)

Query: 1   MAMGKNGLLGWLCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAGRLVVCRA 60
           MAMGKNGLLGWLC                                     HAGRLVVCRA
Sbjct: 1   MAMGKNGLLGWLCVVVPGRRRRRRGARLVLWGGERRAAAAGRMAGEVMMEHAGRLVVCRA 60

Query: 61  DGFCLGRAAPVLAIEDRLDACATYLVLPVDRLPQGRDVVTAASLAALTYDRXXXXXXXXX 120
           DGFCLGRAAPVLAIEDRLDACATYLVLPVDRLPQGRDVVTAASLAALTYDR         
Sbjct: 61  DGFCLGRAAPVLAIEDRLDACATYLVLPVDRLPQGRDVVTAASLAALTYDRAAGAPLLAG 120

Query: 121 XXKSPFEYVKDDGGRTVIKVTEEFIVKAVTXXXXXXXXXXXXXXXXXXXXLCSTPELRKH 180
             KSPFEYVKDDGGRTVIKVTEEFIVKAVT                    LCSTPELRKH
Sbjct: 121 GAKSPFEYVKDDGGRTVIKVTEEFIVKAVTGRRPPAGGGGEGEDAHGAAALCSTPELRKH 180

Query: 181 YEQLVGAARGRPWSPRLETIKERNGXXXXXXXXXSPTGRLSPVRLLGLDKGIK 233
           YEQLVGAARGRPWSPRLETIKERNG         SPTGRLSPVRLLGLDKGIK
Sbjct: 181 YEQLVGAARGRPWSPRLETIKERNGRRRVVDVVVSPTGRLSPVRLLGLDKGIK 233



>Os03g0356526 
          Length = 264

 Score =  181 bits (458), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 107/162 (66%), Gaps = 12/162 (7%)

Query: 56  VVCRADGFCLGRAAPVLAIEDRLDACATYLVLPVDRLPQGRDVVTAASLAALTYDR---- 111
           VVCRADGFC+GR APVLAIEDRL A  TYLVLPVDRLPQG D VTAASLAAL+YDR    
Sbjct: 64  VVCRADGFCIGRPAPVLAIEDRLVAGRTYLVLPVDRLPQGYDAVTAASLAALSYDRGGAG 123

Query: 112 --XXXXXXXXXXXKSPFEYVKDDGGRTVIKVTEEFIVKAVTXX------XXXXXXXXXXX 163
                        KSPFEYVK D GRTVIKVT EFIV+++T                   
Sbjct: 124 AGAAGATSIAGGAKSPFEYVKGDDGRTVIKVTPEFIVRSITSSRPIGACAAAGDEVVEGG 183

Query: 164 XXXXXXXLCSTPELRKHYEQLVGAARGRPWSPRLETIKERNG 205
                  LCSTPELRKHYEQLVGAAR R WSPRLETIKER G
Sbjct: 184 GGGGGAQLCSTPELRKHYEQLVGAARCRAWSPRLETIKERKG 225



>Os05g0385400 Conserved hypothetical protein
          Length = 223

 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 84/175 (48%), Gaps = 12/175 (6%)

Query: 56  VVCRADGFCLGRAAPVLAIEDRLDACATYLVLPVDRLPQGRDVVTAASLAALTYDRXXXX 115
           +VC  D F +G   P L   + L A  TY VLP  R    +  +TAASLA+L+       
Sbjct: 57  LVCAGDSFFIGLPIPALPAGEELAAGRTYFVLPAARF-SCQQALTAASLASLS-PSPAAK 114

Query: 116 XXXXXXXKSPFEYVKDDGGRTVIKVTEEFIVKAVTXXXXXXXXXXXXXXXXXXXXLCSTP 175
                   SPFEYV  D G  +I+V  EFI +A+T                    LCSTP
Sbjct: 115 VSLAGGASSPFEYVTGDDGMALIRVLPEFIERAITCVARVAGGGKAGGEAAADDQLCSTP 174

Query: 176 ELRKHYEQLVGAARGRPWSPRLETIKERNGXXXXXXXXXSPTGRLSPVRLLGLDK 230
           ELRKHY QLVGA + RPWSP LETI E                R SPVRL+ L K
Sbjct: 175 ELRKHYMQLVGARQQRPWSPGLETISEAEKR----------RRRRSPVRLVALAK 219



>Os01g0952900 Conserved hypothetical protein
          Length = 218

 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 53  GRLVVCRADGFCLGRAAPVLAIEDRLDACATYLVLPVDRLPQGRDVVTAASLAALTYDRX 112
           G  VVC AD F +G   PV++  + L A  TY VLP +R    +  V  A+  A      
Sbjct: 50  GDHVVCAADSFYVGLPIPVVSAGEELMAGRTYFVLPAERFSCFK--VLTAAALASLSPAP 107

Query: 113 XXXXXXXXXXKSPFEYVKDDGGRTVIKVTEEFIVKAVTXXXXXXXX---XXXXXXXXXXX 169
                     + PFEYVK +GG T+I+V  EFI K ++                      
Sbjct: 108 SKKVSVAGPGQCPFEYVKGEGGATLIRVLPEFIEKVISCDENGGGARRRKPSTTATATAT 167

Query: 170 XLCSTPELRKHYEQLVGAARGRPWSPRLETIKERN 204
            LCSTPEL++HY  L+G  R +PWSPRLETI E N
Sbjct: 168 ELCSTPELKRHYALLMG-RRNQPWSPRLETISECN 201



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,474,878
Number of extensions: 152116
Number of successful extensions: 221
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 4
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)