Os05g0385400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os05g0385400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 220.9 | 0.698 | 3.93 | 2.1 | 0.0608 | -126 | 0.873 | -261 | 0.098 | 13.6 | 2 | 3 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 230.61 | 0.712 | 2.86 | -0.247 | 0.0226 | -- | 1.15 | -- | 0.0737 | 13.7 | -- | -- | -- | -- |
| 235.31 | 0.718 | 2.85 | -0.212 | 0.098 | -- | -- | -- | 0.0787 | 8.33 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 235.84 | 0.718 | 2.86 | -0.211 | -- | -- | -- | -- | 0.0797 | -- | -- | -- | -- | -- |
| 236.49 | 0.719 | 2.85 | -- | 0.097 | -- | -- | -- | 0.102 | 8.49 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 237.02 | 0.719 | 2.85 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.45 | radiation | 20.0 | 30 | < th | dose dependent | rect. | 10 | 3 |
| 5 | 205.82 | radiation | 10.0 | 30 | < th | dose independent | rect. | 10 | 2 |
| 20 | 207.64 | radiation | 10.0 | 90 | < th | dose independent | rect. | 8 | 4 |
| 90 | 214.16 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 92 | 214.37 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 94 | 214.55 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 96 | 214.76 | humidity | 90.0 | 90 | > th | dose independent | rect. | 22 | 2 |
| 105 | 215.19 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 106 | 215.24 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 114 | 215.34 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 115 | 215.35 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 116 | 215.39 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 141 | 215.96 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 142 | 215.96 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 143 | 215.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 145 | 215.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 3 |
| 177 | 216.30 | atmosphere | 1010.0 | 720 | > th | dose independent | rect. | 1 | 1 |
| 185 | 216.38 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 229 | 216.88 | temperature | 20.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 230 | 216.88 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 12 | 14 |
| 257 | 217.18 | temperature | 20.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 259 | 217.20 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 265 | 217.29 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 268 | 217.31 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 272 | 217.37 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 13 | 10 |
| 301 | 217.60 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 326 | 217.79 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 327 | 217.79 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 370 | 218.00 | temperature | 20.0 | 270 | < th | dose dependent | sin | 14 | NA |
| 397 | 218.10 | humidity | 90.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 412 | 218.16 | temperature | 15.0 | 30 | > th | dose independent | rect. | 23 | 23 |
| 432 | 218.24 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 464 | 218.37 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 468 | 218.40 | humidity | 90.0 | 1440 | < th | dose independent | sin | 22 | NA |
| 470 | 218.40 | humidity | 90.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 478 | 218.45 | temperature | 20.0 | 270 | < th | dose independent | rect. | 20 | 1 |
| 487 | 218.50 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 22 | 10 |
| 490 | 218.51 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 512 | 218.58 | radiation | 10.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 547 | 218.72 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 22 | 1 |
| 568 | 218.80 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 572 | 218.80 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 621 | 218.96 | temperature | 15.0 | 720 | > th | dose independent | rect. | 16 | 8 |
| 632 | 218.99 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 12 | 12 |
| 634 | 218.99 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 655 | 219.03 | temperature | 20.0 | 720 | < th | dose independent | rect. | 12 | 11 |
| 668 | 219.06 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 690 | 219.12 | wind | 3.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 757 | 219.27 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 759 | 219.27 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 774 | 219.31 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 2 | 16 |
| 810 | 219.40 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 822 | 219.43 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 2 | 13 |
| 865 | 219.55 | wind | 3.0 | 30 | < th | dose independent | rect. | 22 | 2 |
| 928 | 219.65 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 935 | 219.67 | humidity | 90.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 940 | 219.68 | atmosphere | 1010.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 951 | 219.71 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 979 | 219.76 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 16 | 5 |