BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0644300 Os07g0644300|AK066726
(931 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0644300 Similar to XPA-binding protein 2 (Adapter prot... 1656 0.0
Os06g0235800 877 0.0
Os01g0686600 Tetratricopeptide-like helical domain containi... 204 2e-52
Os05g0289400 Similar to CRN (Crooked neck) protein 83 1e-15
>Os07g0644300 Similar to XPA-binding protein 2 (Adapter protein ATH-55)
Length = 931
Score = 1656 bits (4289), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 817/910 (89%), Positives = 817/910 (89%)
Query: 22 LGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLVXXXXXXXXXXXVIYERALKALPGSY 81
LGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLV VIYERALKALPGSY
Sbjct: 22 LGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLVARAAAPFAKRAVIYERALKALPGSY 81
Query: 82 KLWHAYLRERLDHARPHPISHHAYASLNNTFERALATMHKMPRVWVLYLTSLLDQXXXXX 141
KLWHAYLRERLDHARPHPISHHAYASLNNTFERALATMHKMPRVWVLYLTSLLDQ
Sbjct: 82 KLWHAYLRERLDHARPHPISHHAYASLNNTFERALATMHKMPRVWVLYLTSLLDQRLLTR 141
Query: 142 XXXXXXXXXXXXPVTQHDRIWPLYLRLASLPACPVETSLRVFRRYLQYDPSHAEDFIDFL 201
PVTQHDRIWPLYLRLASLPACPVETSLRVFRRYLQYDPSHAEDFIDFL
Sbjct: 142 ARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETSLRVFRRYLQYDPSHAEDFIDFL 201
Query: 202 ISANRWQEAADRLASVLNDDGFRSVKGKTQHQLWLELCEILTKHADEVAGLKVDAILRGG 261
ISANRWQEAADRLASVLNDDGFRSVKGKTQHQLWLELCEILTKHADEVAGLKVDAILRGG
Sbjct: 202 ISANRWQEAADRLASVLNDDGFRSVKGKTQHQLWLELCEILTKHADEVAGLKVDAILRGG 261
Query: 262 IRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASVMTVQEFSVVFEAYTQFEQSML 321
IRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASVMTVQEFSVVFEAYTQFEQSML
Sbjct: 262 IRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASVMTVQEFSVVFEAYTQFEQSML 321
Query: 322 AAKLXXXXXXXXXXXXXXXXXRKNGMDKLSKKFLADCWLNDEDDTDLRLARFERLLDRRP 381
AAKL RKNGMDKLSKKFLADCWLNDEDDTDLRLARFERLLDRRP
Sbjct: 322 AAKLEAAEEEGAGSEGEEEAGRKNGMDKLSKKFLADCWLNDEDDTDLRLARFERLLDRRP 381
Query: 382 ELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFA 441
ELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFA
Sbjct: 382 ELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFA 441
Query: 442 KMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQATAE 501
KMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQATAE
Sbjct: 442 KMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQATAE 501
Query: 502 PSVEVKRRAAAEGDEPVQLKVHKSLKLWSFYVDLEESLGTLESTRAVYERILDLRIATPQ 561
PSVEVKRRAAAEGDEPVQLKVHKSLKLWSFYVDLEESLGTLESTRAVYERILDLRIATPQ
Sbjct: 502 PSVEVKRRAAAEGDEPVQLKVHKSLKLWSFYVDLEESLGTLESTRAVYERILDLRIATPQ 561
Query: 562 IVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVRRYQRSKLERAREL 621
IVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVRRYQRSKLERAREL
Sbjct: 562 IVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVRRYQRSKLERAREL 621
Query: 622 FDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDEAVRAVPNSEKMSMYEIYIARA 681
FDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDEAVRAVPNSEKMSMYEIYIARA
Sbjct: 622 FDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDEAVRAVPNSEKMSMYEIYIARA 681
Query: 682 AELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERNLGEIDRARAIYVHASNYADPN 741
AELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERNLGEIDRARAIYVHASNYADPN
Sbjct: 682 AELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERNLGEIDRARAIYVHASNYADPN 741
Query: 742 SHPEFWNKWNEFEIQHGNEDTFREMLRIKRTVAASRSQTHFILPEYLMQRDQRLNLDEAV 801
SHPEFWNKWNEFEIQHGNEDTFREMLRIKRTVAASRSQTHFILPEYLMQRDQRLNLDEAV
Sbjct: 742 SHPEFWNKWNEFEIQHGNEDTFREMLRIKRTVAASRSQTHFILPEYLMQRDQRLNLDEAV 801
Query: 802 DTLKRAGVPEDEMANLERQLXXXXXXXXXXXXXXXXXXNRMMNFVSAGVXXXXXXXXXXX 861
DTLKRAGVPEDEMANLERQL NRMMNFVSAGV
Sbjct: 802 DTLKRAGVPEDEMANLERQLAPGPSTAPPAPSTATAPANRMMNFVSAGVQAQAESSSRQQ 861
Query: 862 XXXXTNNXXXXXXXXXXXXXXXVQIAEKSVPAAVFGELGKRAAENREEESSGAQENEQLG 921
TNN VQIAEKSVPAAVFGELGKRAAENREEESSGAQENEQLG
Sbjct: 862 QAAATNNEDIELPDESDEEEDDVQIAEKSVPAAVFGELGKRAAENREEESSGAQENEQLG 921
Query: 922 ALERIKRRRQ 931
ALERIKRRRQ
Sbjct: 922 ALERIKRRRQ 931
>Os06g0235800
Length = 801
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/794 (55%), Positives = 569/794 (71%), Gaps = 32/794 (4%)
Query: 21 ALGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLVXXXXXXXXXXXVIYERALKALPGS 80
A+ ISPE D+ YEE++LREPF+L+ W RYL VIYERAL+ALPGS
Sbjct: 4 AMMISPE------DVPYEEDVLREPFRLRCWTRYLSAIRSAPLAKRSVIYERALRALPGS 57
Query: 81 YKLWHAYLRERLDHARPHPISHHAYASLNNTFERALAT-MHKMPRVWVLYLTSLLDQXXX 139
YKLWHAYL E D AR P++H A+A+LN+ FER+LA M +MPRVW +Y ++LLDQ
Sbjct: 58 YKLWHAYLTELADAARAMPVAHRAHAALNSAFERSLAAGMSRMPRVWHMYFSALLDQRLL 117
Query: 140 XXXXXXXXXXXXXXPVTQHDRIWPLYLRLASLPACPVETSLRVFRRYLQYDPSHAEDFID 199
PVTQH R+WPL LRLASLP CPV T++RV RR+LQ+DP+HAE FI
Sbjct: 118 TRARRALDRALRSLPVTQHHRMWPLLLRLASLPGCPVPTAIRVLRRHLQFDPAHAEHFIA 177
Query: 200 FLISANRWQEAADRLASVLNDDGFRSVKGKTQHQLWLELCEILTKHADEVAGLKVDAILR 259
FL+SA RW+EAAD LA+ +NDD F S KG+T+ QL L+LC +L +H +EVAGL VDAILR
Sbjct: 178 FLVSAGRWREAADHLAAAVNDDCFVSAKGRTKRQLLLDLCHLLAQHPEEVAGLPVDAILR 237
Query: 260 GGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASVMTVQEFSVVFEAYTQFEQS 319
G +R+F DE G LWT LA +Y R L+ KARDVFEEGVA+ TV++F +VFEAY FE +
Sbjct: 238 GSVRRFPDEAGALWTCLAGHYARVGLHGKARDVFEEGVATATTVKDFRLVFEAYLHFENA 297
Query: 320 MLAAKLXXXXXXXXXXXXXXXXXRKNGMDKLSKKFLADCWLNDEDDTDLRLARFERLLDR 379
M+ +L ++G D CWL D DD D+ LAR ERLL+R
Sbjct: 298 MIDVELG-----------------EHG-DAEENTLGQGCWLADRDDGDMALARLERLLER 339
Query: 380 RPELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEAVKTVDPMKAAGKP--HTLW 437
RPELL+ V LRQNPH+V+ WH R KLF++DP R+VATYVEAVKTVDP KA GKP HTLW
Sbjct: 340 RPELLNRVQLRQNPHDVQAWHARAKLFDEDPARKVATYVEAVKTVDPAKATGKPPPHTLW 399
Query: 438 VAFAKMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMELRHSNFDKAIELMRQ 497
+AFAKMYE LDSA E+ ++ATQ ++KA DHLA++WCEWAEMELR N ++AIEL+RQ
Sbjct: 400 LAFAKMYEDRGLLDSAREVLRRATQASFKAADHLAAVWCEWAEMELRQHNANRAIELIRQ 459
Query: 498 ATAEPSVEVKRRAAAE-GDEPVQLKVHKSLKLWSFYVDLEESLGTLESTRAVYERILDLR 556
AT+EPS+EV+R+ AA G+ VQ K+H+SLKLW FY DL E+ G+ EST AVY+R+ +L
Sbjct: 460 ATSEPSLEVRRQVAAGVGETVVQTKLHRSLKLWCFYADLMETHGSPESTCAVYDRMHELG 519
Query: 557 IATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVRRYQRSKLE 616
I TP +VL +A LL+E+K FEDAF+VYERGV+ FKYPH + IW YLTKFV R+ SK +
Sbjct: 520 IITPLLVLRHASLLQEHKRFEDAFRVYERGVRTFKYPHDEAIWAAYLTKFVERHGASKPQ 579
Query: 617 RARELFDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKRAMNVYDEAVRAVPNSEKMSMYEI 676
R R+LFD+AV+ AP ++K +Y+QYA+ EED+GLAKR + VY+EA AVP +K+++YE
Sbjct: 580 RVRDLFDDAVRHAPAEKKAAVYMQYARFEEDFGLAKRVLKVYEEAAAAVPGGDKLAVYEA 639
Query: 677 YIARAAELFGVPRTRQIYEQAI--ESGLPDRDVMTMCMKFAELERNLGEIDRARAIYVHA 734
Y+ARA LFGV + R+IY QAI GLPD D +C++FA+LE LGE RARA+YV+A
Sbjct: 640 YVARATALFGVLKAREIYHQAILHGGGLPDADARVLCLQFADLEIGLGEAHRARALYVYA 699
Query: 735 SNYADPNSHPEFWNKWNEFEIQHGNEDTFREMLRIKRTVAASRSQTHFI--LPEYLMQRD 792
S + DP +HP+FW +WN+FE++HG+E TFREMLR+KRTVAA+ + + L E ++ D
Sbjct: 700 SGFTDPTAHPDFWRRWNDFEVRHGDECTFREMLRVKRTVAAANAGAGAVAQLAEQVLADD 759
Query: 793 QRLNLDEAVDTLKR 806
+D AV KR
Sbjct: 760 AMEQMDAAVAAPKR 773
>Os01g0686600 Tetratricopeptide-like helical domain containing protein
Length = 396
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/168 (61%), Positives = 124/168 (73%), Gaps = 3/168 (1%)
Query: 489 DKAIELMRQATAEPSVEVKRRAAAEG---DEPVQLKVHKSLKLWSFYVDLEESLGTLEST 545
+KAI LMRQATAEPS EVK RAAA DEP QLK+HKS KLWSFYVDLEESLG L ST
Sbjct: 93 NKAIALMRQATAEPSAEVKLRAAAAAAGDDEPAQLKLHKSAKLWSFYVDLEESLGALAST 152
Query: 546 RAVYERILDLRIATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTK 605
RA YE + R ATPQ+V+NYA LEE YFED+F YE G +F +PH K IW TYL +
Sbjct: 153 RAAYEGAMAARAATPQMVINYASFLEERGYFEDSFAAYETGANLFGHPHSKPIWDTYLER 212
Query: 606 FVRRYQRSKLERARELFDEAVKQAPPQEKKVLYLQYAKLEEDYGLAKR 653
FV R+ SK ERARELF EA ++APP ++ L+L++A+ EE++G A R
Sbjct: 213 FVARHGGSKAERARELFAEATRRAPPHDRARLFLRHARYEEEFGSAAR 260
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 30 PTEDDLAYEEEILREPFKLKGWWRYLVXXXXXXXXXXXVIYERALKALPGSYKLWHAYLR 89
P+E DL YEE++LR+P ++ W RYL VIYERA++ALPGSYKLWHAYL
Sbjct: 15 PSEADLPYEEDVLRDPHSIRPWRRYLAARAAAPLQERAVIYERAVRALPGSYKLWHAYLL 74
Query: 90 ERL---DHARPHPISHHA 104
ER A+PH H A
Sbjct: 75 ERTAAAARAKPHCGEHPA 92
>Os05g0289400 Similar to CRN (Crooked neck) protein
Length = 723
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 11/256 (4%)
Query: 516 EPVQLKVHKSLKLWSFYVDLEESLGTLESTRAVYERILDLRIATPQIVLNYAYLLEENKY 575
E V +V ++ W Y EE R+VYER LD+ + L YA N++
Sbjct: 97 EDVIRRVRWNVNAWVKYAKWEEQQRDFARARSVYERALDVAHRDHTLWLKYAEFEMRNRF 156
Query: 576 FEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVRRYQRSKLERARELFDEAVKQAPPQEKK 635
A V++R V + P V +W Y+ + AR++F+ + P
Sbjct: 157 VNHARNVWDRAVSLL--PRVDQLWYKYIHM---EELLGAVANARQVFERWMAWRP---DT 208
Query: 636 VLYLQYAKLEEDYGLAKRAMNVYDEAVRAVPNSEKMSMYEIYIARAAELFGVPRTRQIYE 695
+ Y K E YG +RA +Y+ V P + Y + + E V R RQ+Y+
Sbjct: 209 AGWNSYIKFELRYGEVERARAIYERFVAEHPRPDTFIRYAKFEMKRGE---VERARQVYQ 265
Query: 696 QAIESGLPDRDVMTMCMKFAELERNLGEIDRARAIYVHASNYADPNSHPEFWNKWNEFEI 755
+A + D D + + FAE E E++RARAIY +A + E + K+ FE
Sbjct: 266 RAADLLADDEDAQVLFVAFAEFEERCREVERARAIYKYALDRVPKGQAEELYRKFLAFEK 325
Query: 756 QHGNEDTFREMLRIKR 771
Q G+ + + + KR
Sbjct: 326 QFGDREGIEDAIVGKR 341
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 116/489 (23%), Positives = 187/489 (38%), Gaps = 134/489 (27%)
Query: 388 LLRQNPHNVEEWHRRVKLFE--KDPTRQVATYVEAVKTVDPMKAAGKPHTLWVAFAKMYE 445
++R+ NV W + K E +D R + Y A + A + HTLW+ +A+ +E
Sbjct: 99 VIRRVRWNVNAWVKYAKWEEQQRDFARARSVYERA------LDVAHRDHTLWLKYAE-FE 151
Query: 446 KHNRL--------DSAEEIFKKATQVNYKAVDHLASI----------------------- 474
NR D A + + Q+ YK + H+ +
Sbjct: 152 MRNRFVNHARNVWDRAVSLLPRVDQLWYKYI-HMEELLGAVANARQVFERWMAWRPDTAG 210
Query: 475 WCEWAEMELRHSNFDKAIEL---------------------MRQATAEPSVEVKRRAA-- 511
W + + ELR+ ++A + M++ E + +V +RAA
Sbjct: 211 WNSYIKFELRYGEVERARAIYERFVAEHPRPDTFIRYAKFEMKRGEVERARQVYQRAADL 270
Query: 512 AEGDEPVQLKVHKSLKLWSFYVDLEESLGTLESTRAVYERILDLRIATPQIVLNYAYLLE 571
DE Q+ L+ + + EE +E RA+Y+ LD R+ Q Y L
Sbjct: 271 LADDEDAQV-------LFVAFAEFEERCREVERARAIYKYALD-RVPKGQAEELYRKFLA 322
Query: 572 ENKYFEDAFKVYER--GVKIFKY-------PHVKDIWVTYLTKFVRRYQRS--KLERARE 620
K F D + + G + F+Y P D W Y+ R + S +R RE
Sbjct: 323 FEKQFGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYI-----RLEESVGNNDRIRE 377
Query: 621 LFDEAVKQAPPQEKK-------VLYLQYAKLEE-DYGLAKRAMNVYDEAVRAVPN----- 667
+++ A+ PP ++K L++ YA EE D +R VY E ++ VP+
Sbjct: 378 VYERAIANIPPADEKRYWQRYIYLWINYALYEELDAKDVERTREVYSECLKLVPHKKFTF 437
Query: 668 ------------------------------SEKMSMYEIYIARAAELFGVPRTRQIYEQA 697
S K +++ YI L R R +YE+
Sbjct: 438 AKMWLMAAQFEIRQRNLKAARQILGNAIGMSPKGKIFKKYIEIELYLGNFDRCRTLYEKY 497
Query: 698 IESGLPDRDVMTMCMKFAELERNLGEIDRARAIYVHASNYADPNSHPEFWNKWNEFEIQH 757
IE + K+AELE+NL E DRAR+IY A ++ W ++ +FEI
Sbjct: 498 IEWSPAN---CYAWRKYAELEKNLSETDRARSIYELAIAQPALDTPEVLWKEYLQFEIDE 554
Query: 758 GNEDTFREM 766
D RE+
Sbjct: 555 NEFDRTREL 563
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,537,813
Number of extensions: 1015629
Number of successful extensions: 3243
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 3166
Number of HSP's successfully gapped: 9
Length of query: 931
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 821
Effective length of database: 11,292,261
Effective search space: 9270946281
Effective search space used: 9270946281
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)